CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSCJAG00000031736
(
Callithrix jacchus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCJAG00000031736
T35713_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000018325
RRM
4
66
VYIGRPSCQAREHDVERFFKGYGKILEVDLKNRYGFVEFDDLPDADDAVYELNGKDLCGERVI
ENSCJAP00000018325
RRM
106
171
LIVENLSSRCSWQDLKDYVRQAGEVTSADAQKGRKKEGVIEFVSYSDVKRALEKLDGTEVNGRKIR
Links
Other
RRM
family RBPs
Other
Callithrix jacchus
RBPs
76 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002889862.1
Arabidopsis lyrata
Al_scaffold_0001_1216
N
0.000
XM_002886912.1
Arabidopsis lyrata
Al_scaffold_0001_2509
N
0.000
XM_002887218.1
Arabidopsis lyrata
Al_scaffold_0002_1656
N
0.000
XM_002885335.1
Arabidopsis lyrata
Al_scaffold_0003_2191
N
0.000
XM_002884145.1
Arabidopsis lyrata
Al_scaffold_0003_3962
N
0.000
XM_002886912.1
Arabidopsis lyrata
Al_scaffold_0007_2456
N
0.000
XM_002891214.1
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_1003297
N
0.000
fgenesh1_pg.C_scaffold_22000003
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_22000003
N
0.000
fgenesh1_pg.C_scaffold_408000001
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_408000001
N
0.000
XM_002875400.1
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_5000596
N
0.000
XM_002874352.1
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_6002361
N
0.000
XM_002886149.1
Arabidopsis lyrata
scaffold_304236.1
N
0.000