CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSCJAG00000032158
(
Callithrix jacchus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCJAG00000032158
T35714_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000046622
RRM
1
49
WGMLIDCMVMSYPNTKRSRGFGFVTYATLDKVDAAMNARSHKVPGRVVE
ENSCJAP00000046622
RRM
71
139
VVGGIKEDTEEHHLRDYFEQYGKIKVIEIMTNRGSGKKRGFAFVTFDNHDSMHKTVIQKYHIVNGHNSE
Links
Other
RRM
family RBPs
Other
Callithrix jacchus
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
DGIL_AUG5s1009g5t1
Acyrtosiphon pisum
DGIL_AUG5s1009g5t1
N
0.000
KRR1
Oryzias latipes
ENSORLG00000019616
N
0.000
estExt_Genewise1Plus.C_20041
Sporobolomyces roseus
estExt_Genewise1Plus.C_20041
N
0.000
GF14827
Drosophila ananassae
FBgn0091854
N
0.000
nasonia_NCBI_hmm386444
Nasonia vitripennis
nasonia_NCBI_hmm386444
N
0.000
PASA_GEN_0400107
Daphnia pulex
PASA_GEN_0400107
N
0.000
PHUM590060
Pediculus humanus
PHUM590060
N
0.000