ENSCAFG00000002232 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000002232 T34989_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.732
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.732
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.732
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.718
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000003248 RRM 1 51
ENSCAFP00000003248 RRM 73 142

Links

Other RRM family RBPs
Other Canis familiaris RBPs

10 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCAFG00000001123 Canis familiaris ENSCAFG00000001123 I 0.777
ENSMMUG00000005993 Macaca mulatta ENSMMUG00000005993 I 0.762
ENSCJAG00000032158 Callithrix jacchus ENSCJAG00000032158 N 0.752
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.750
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.718
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.711
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.711
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.703
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.703
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.703