ENSCSAVG00000000396 (Ciona savignyi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCSAVG00000000396 T35936_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.804
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.768
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.768
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.768
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.768
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.768
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.768
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.768
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.768
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000000704 RRM 10 79
ENSCSAVP00000000704 RRM 146 209
ENSCSAVP00000000705 RRM 13 82
ENSCSAVP00000000705 RRM 162 225
ENSCSAVP00000000706 RRM 12 81
ENSCSAVP00000000706 RRM 197 260
ENSCSAVP00000000707 RRM 9 78
ENSCSAVP00000000707 RRM 138 201
ENSCSAVP00000000708 RRM 10 79
ENSCSAVP00000000708 RRM 171 234
ENSCSAVP00000000709 RRM 9 78
ENSCSAVP00000000709 RRM 199 262
ENSCSAVP00000000710 RRM 9 78
ENSCSAVP00000000710 RRM 200 263

Links

Other RRM family RBPs
Other Ciona savignyi RBPs

113 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Genemark.10134_g Serpula lacrymans Genemark.10134_g N 0.000
Genemark.10428_g Serpula lacrymans Genemark.10428_g N 0.000
Genemark.10431_g Serpula lacrymans Genemark.10431_g N 0.000
Genemark.10542_g Serpula lacrymans Genemark.10542_g N 0.000
Genemark.10616_g Serpula lacrymans Genemark.10616_g N 0.000
Genemark.10659_g Serpula lacrymans Genemark.10659_g N 0.000
Genemark.10663_g Serpula lacrymans Genemark.10663_g N 0.000
Genemark.10994_g Serpula lacrymans Genemark.10994_g N 0.000
Genemark.114_g Serpula lacrymans Genemark.114_g N 0.000
Genemark.11728_g Serpula lacrymans Genemark.11728_g N 0.000
Genemark.11784_g Serpula lacrymans Genemark.11784_g N 0.000
Genemark.11883_g Serpula lacrymans Genemark.11883_g N 0.000
Genemark.12078_g Serpula lacrymans Genemark.12078_g N 0.000
Genemark.12100_g Serpula lacrymans Genemark.12100_g N 0.000
Genemark.12122_g Serpula lacrymans Genemark.12122_g N 0.000
Genemark.12220_g Serpula lacrymans Genemark.12220_g N 0.000
Genemark.12630_g Serpula lacrymans Genemark.12630_g N 0.000
Genemark.12634_g Serpula lacrymans Genemark.12634_g N 0.000
Genemark.1711_g Serpula lacrymans Genemark.1711_g N 0.000
Genemark.1916_g Serpula lacrymans Genemark.1916_g N 0.000
Genemark.1932_g Serpula lacrymans Genemark.1932_g N 0.000
Genemark.2433_g Serpula lacrymans Genemark.2433_g N 0.000
Genemark.2704_g Serpula lacrymans Genemark.2704_g N 0.000
Genemark.2746_g Serpula lacrymans Genemark.2746_g N 0.000
Genemark.2815_g Serpula lacrymans Genemark.2815_g N 0.000
Genemark.2836_g Serpula lacrymans Genemark.2836_g N 0.000
Genemark.2894_g Serpula lacrymans Genemark.2894_g N 0.000
Genemark.291_g Serpula lacrymans Genemark.291_g N 0.000
Genemark.3177_g Serpula lacrymans Genemark.3177_g N 0.000
Genemark.383_g Serpula lacrymans Genemark.383_g N 0.000
Genemark.398_g Serpula lacrymans Genemark.398_g N 0.000
Genemark.4171_g Serpula lacrymans Genemark.4171_g N 0.000
Genemark.4605_g Serpula lacrymans Genemark.4605_g N 0.000
Genemark.4784_g Serpula lacrymans Genemark.4784_g N 0.000
Genemark.4804_g Serpula lacrymans Genemark.4804_g N 0.000
Genemark.4852_g Serpula lacrymans Genemark.4852_g N 0.000
Genemark.4875_g Serpula lacrymans Genemark.4875_g N 0.000
Genemark.697_g Serpula lacrymans Genemark.697_g N 0.000
Genemark.7181_g Serpula lacrymans Genemark.7181_g N 0.000
Genemark.7317_g Serpula lacrymans Genemark.7317_g N 0.000
Genemark.7905_g Serpula lacrymans Genemark.7905_g N 0.000
Genemark.8449_g Serpula lacrymans Genemark.8449_g N 0.000
Genemark.8452_g Serpula lacrymans Genemark.8452_g N 0.000
Genemark.8722_g Serpula lacrymans Genemark.8722_g N 0.000
Genemark.8764_g Serpula lacrymans Genemark.8764_g N 0.000
Genemark.8882_g Serpula lacrymans Genemark.8882_g N 0.000
Genemark.9154_g Serpula lacrymans Genemark.9154_g N 0.000
Genemark.920_g Serpula lacrymans Genemark.920_g N 0.000
Genemark.948_g Serpula lacrymans Genemark.948_g N 0.000
Genemark.9611_g Serpula lacrymans Genemark.9611_g N 0.000
Genemark.9644_g Serpula lacrymans Genemark.9644_g N 0.000
Genemark.9654_g Serpula lacrymans Genemark.9654_g N 0.000