ENSCSAVG00000000396 (Ciona savignyi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCSAVG00000000396 T35936_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.804
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.768
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.768
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.768
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.768
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.768
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.768
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.768
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.768
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000000704 RRM 10 79
ENSCSAVP00000000704 RRM 146 209
ENSCSAVP00000000705 RRM 13 82
ENSCSAVP00000000705 RRM 162 225
ENSCSAVP00000000706 RRM 12 81
ENSCSAVP00000000706 RRM 197 260
ENSCSAVP00000000707 RRM 9 78
ENSCSAVP00000000707 RRM 138 201
ENSCSAVP00000000708 RRM 10 79
ENSCSAVP00000000708 RRM 171 234
ENSCSAVP00000000709 RRM 9 78
ENSCSAVP00000000709 RRM 199 262
ENSCSAVP00000000710 RRM 9 78
ENSCSAVP00000000710 RRM 200 263

Links

Other RRM family RBPs
Other Ciona savignyi RBPs

113 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.899
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.812
GE16390 Drosophila yakuba FBgn0233919 I 0.804
GJ16850 Drosophila virilis FBgn0204029 I 0.804
GK25839 Drosophila willistoni FBgn0227798 I 0.804
snf Drosophila melanogaster FBgn0003449 D 0.804
GM12396 Drosophila sechellia FBgn0167333 I 0.804
snf Drosophila mojavensis FBgn0069598 I 0.804
GG18748 Drosophila erecta FBgn0110957 I 0.804
GH24608 Drosophila grimshawi FBgn0132064 I 0.804
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.803
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.803
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.799
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.797
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.797
GL14287 Drosophila persimilis FBgn0151892 I 0.797
GF21334 Drosophila ananassae FBgn0098336 I 0.797
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.796
AAEL002980 Aedes aegypti AAEL002980 I 0.790
AAEL014167 Aedes aegypti AAEL014167 I 0.790
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.788
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.784
e_gw.11.168.1 Nematostella vectensis e_gw.11.168.1 I 0.781
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 0.775
CpipJ_CPIJ019134 Culex pipiens CpipJ_CPIJ019134 I 0.775
AGAP011637 Anopheles gambiae AGAP011637 I 0.775
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.775
SNRPA Oryzias latipes ENSORLG00000006536 I 0.774
SNRPA Procavia capensis ENSPCAG00000012325 I 0.768
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.768
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.768
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.768
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.768
SNRPA Sus scrofa ENSSSCG00000002998 I 0.768
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.768
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.768
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.768
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.768
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.768
SNRPA Canis familiaris ENSCAFG00000005091 I 0.768
SNRPA Homo sapiens ENSG00000077312 D 0.768
LOC100068274 Equus caballus ENSECAG00000013141 I 0.768
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.768
SNRPA Felis catus ENSFCAG00000016209 I 0.768
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.768
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.768
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.768
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.768
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.768
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.761
AAH44979 Xenopus laevis AAH44979 I 0.761
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.761
snrpa Danio rerio ENSDARG00000018890 I 0.761
P45429 Xenopus laevis P45429 I 0.761
CAA41021 Xenopus laevis CAA41021 I 0.761
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.754
Snrpa Mus musculus ENSMUSG00000061479 I 0.754
e_gw1.1.761.1 Trichoplax adhaerens e_gw1.1.761.1 I 0.752
DGIL_AUG5s14106g2t1 Acyrtosiphon pisum DGIL_AUG5s14106g2t1 I 0.746
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.746
SNRPA Tetraodon nigroviridis ENSTNIG00000007732 I 0.746
SNRPA Gasterosteus aculeatus ENSGACG00000009838 I 0.745
LOC100407601 Callithrix jacchus ENSCJAG00000023308 I 0.743
snrpb2 Danio rerio ENSDARG00000039424 I 0.737
Snrpb2 Mus musculus ENSMUSG00000008333 I 0.734
SNRPB2 Macaca mulatta ENSMMUG00000014493 I 0.734
SNRPB2 Ornithorhynchus anatinus ENSOANG00000001237 I 0.734
SNRPB2 Microcebus murinus ENSMICG00000015404 I 0.734
SNRPB2 Otolemur garnettii ENSOGAG00000015146 I 0.734
SNRPB2 Cavia porcellus ENSCPOG00000005014 I 0.734
SNRPB2 Oryctolagus cuniculus ENSOCUG00000001427 I 0.734
SNRPB2 Gorilla gorilla ENSGGOG00000003937 I 0.734
LOC100408625 Callithrix jacchus ENSCJAG00000004811 I 0.734
LOC100050830 Equus caballus ENSECAG00000018407 I 0.734
LOC477148 Canis familiaris ENSCAFG00000005520 I 0.734
SNRPB2 Homo sapiens ENSG00000125870 I 0.734
SNRPB2 Ochotona princeps ENSOPRG00000011587 I 0.734
Q3T0M6_BOVIN Bos taurus ENSBTAG00000027506 I 0.734
SNRPB2 Loxodonta africana ENSLAFG00000008775 I 0.734
Ame_R017767 Ailuropoda melanoleuca Ame_R017767 I 0.734
SNRPB2 Tarsius syrichta ENSTSYG00000008857 I 0.734
SNRPB2 Sus scrofa ENSSSCG00000007081 I 0.734
SNRPB2 Tupaia belangeri ENSTBEG00000012892 I 0.734
SNRPB2 Spermophilus tridecemlineatus ENSSTOG00000009198 I 0.734
SNRPB2 Sorex araneus ENSSARG00000002681 I 0.734
SNRPB2 Tursiops truncatus ENSTTRG00000006395 I 0.734
Snrpb2 Rattus norvegicus ENSRNOG00000004967 I 0.734
ENSPPYG00000010723 Pongo pygmaeus ENSPPYG00000010723 I 0.734
SNRPB2 Procavia capensis ENSPCAG00000003156 I 0.734
SNRPB2 Pan troglodytes ENSPTRG00000013271 I 0.734
SNRPB2 Vicugna pacos ENSVPAG00000004557 I 0.734
SNRPA Oryctolagus cuniculus ENSOCUG00000024618 I 0.732
SNRPA Echinops telfairi ENSETEG00000019205 I 0.732
105398 Helobdella robusta 105398 I 0.728
SNRPB2 Gallus gallus ENSGALG00000008729 I 0.727
SNRPB2 Taeniopygia guttata ENSTGUG00000002415 I 0.727
SNRPB2 Myotis lucifugus ENSMLUG00000008163 I 0.727
SNRPB2 Meleagris gallopavo ENSMGAG00000006135 I 0.727
SNRPB2 Oryzias latipes ENSORLG00000019421 I 0.723
Aqu1.229782 Amphimedon queenslandica Aqu1.229782 I 0.719
SNRPB2 Takifugu rubripes ENSTRUG00000009060 I 0.715
SNRPB2 Tetraodon nigroviridis ENSTNIG00000002735 I 0.715
snrpb2 Xenopus tropicalis ENSXETG00000003550 I 0.712
AAH72799 Xenopus laevis AAH72799 I 0.712
SNRPB2 Anolis carolinensis ENSACAG00000000582 I 0.712
SNRPB2 Monodelphis domestica ENSMODG00000005392 I 0.712
AAH84107 Xenopus laevis AAH84107 I 0.710
SNRPB2 Gasterosteus aculeatus ENSGACG00000019682 I 0.708
186191 Helobdella robusta 186191 I 0.708
SNRPB2 Pteropus vampyrus ENSPVAG00000016140 I 0.705
XP_001202981.1 Strongylocentrotus purpuratus XP_001202981.1 I 0.701
XP_789234.2 Strongylocentrotus purpuratus XP_789234.2 I 0.701