CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TRMT2A
(
Gasterosteus aculeatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGACG00000012965
T37502_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000017145
RRM
79
144
VEIRNLPKFIGFNDLKKFLAKHGVDPHKIKLFGKQTFAFVTFKNEEERDKAMKLVHGMQWKGQVLS
ENSGACP00000017146
RRM
17
82
VEIRNLPKFIGFNDLKKFLAKHGVDPHKIKLFGKQTFAFVTFKNEEERDKAMKLVHGMQWKGQVLS
Links
Other
RRM
family RBPs
Other
Gasterosteus aculeatus
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAI42551
Xenopus laevis
AAI42551
N
0.758
TRMT2A
Anolis carolinensis
ENSACAG00000007994
N
0.758
TRMT2A
Gallus gallus
ENSGALG00000002094
N
0.727
TRMT2A
Tetraodon nigroviridis
ENSTNIG00000016761
N
0.894
TRMT2A
Takifugu rubripes
ENSTRUG00000013546
N
0.909
trmt2a
Xenopus tropicalis
ENSXETG00000006323
N
0.742