CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RAVER2
(
Oryctolagus cuniculus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSOCUG00000006221
T39642_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOCUP00000005387
RRM
59
122
ILVRNLPQDCSCQEIHDLLKDYELKYCYVDRNKRTAFVTLLNGEQAQKAIQMFHQYSFRGKDLI
ENSOCUP00000005387
RRM
132
202
LCITNLPISFTLEEFEELVGGYGNVERCFLIYSEITGHSKGYGFVEYMKKDFAAKARLDLLGKQLGESALF
ENSOCUP00000005387
RRM
221
291
LCVDKLPGDYTDSEELLQYFSSVHKPVFCQLAQDEGSYVGDFAVVEYSTAEQAEEVQRAADGMTIKGSKVH
ENSOCUP00000020016
RRM
72
135
ILVRNLPQDCSCQEIHDLLKDYELKYCYVDRNKRTAFVTLLNGEQAQKAIQMFHQYSFRGKDLI
ENSOCUP00000020016
RRM
145
215
LCITNLPISFTLEEFEELVGGYGNVERCFLIYSEITGHSKGYGFVEYMKKDFAAKARLDLLGKQLGESALF
ENSOCUP00000020016
RRM
234
304
LCVDKLPGDYTDSEELLQYFSSVHKPVFCQLAQDEGSYVGDFAVVEYSTAEQAEEVQRAADGMTIKGSKVH
Links
Other
RRM
family RBPs
Other
Oryctolagus cuniculus
RBPs
26 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Cd36_45030
Candida dubliniensis
Cd36_45030
N
0.000
CLUG_04502
Candida lusitaniae
CLUG_04502
N
0.000
CTRG_03880
Candida tropicalis
CTRG_03880
N
0.000
estExt_gwp_genewisePlus_human.C_chr_1.11498
Pichia stipitis
estExt_gwp_genewisePlus_human.C_chr_1.11498
N
0.000
PUF3
Candida albicans
orf19.1795
N
0.000
PGUG_05371
Candida guilliermondii
PGUG_05371
N
0.000