CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CELF3
(
Tetraodon nigroviridis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTNIG00000017546
T42165_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000020690
RRM
12
81
LFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNALHEQKTLPGMN
ENSTNIP00000020690
RRM
107
174
LFVGMLGKQQTDADVRKMFEPFGSIEECTVSAGDGTSKGCAFVKYQSNAEAQAAINTLHGSRTLPGAS
ENSTNIP00000020690
RRM
371
393
IFIYHLPQEFTDSEILQMFLPFG
ENSTNIP00000020690
RRM
390
421
LPFGFVSFDNPSSAQTAIQAMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Tetraodon nigroviridis
RBPs
1 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CELF3
Takifugu rubripes
ENSTRUG00000014225
I
0.742