CELF3 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000014225 T42346_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.843
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.814
BRUNOL4
M004_0.6 		Homo sapiens KGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00004 		0.744
unc-75
M079_0.6 		Caenorhabditis elegans UGUUGUD RNAcompete
Ray et al.(2013)
RNCMPT00081 		0.735
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000036368 RRM 12 80
ENSTRUP00000036368 RRM 102 168
ENSTRUP00000036368 RRM 406 476
ENSTRUP00000036369 RRM 12 80
ENSTRUP00000036369 RRM 117 179
ENSTRUP00000036369 RRM 389 459
ENSTRUP00000036370 RRM 12 80
ENSTRUP00000036370 RRM 100 168
ENSTRUP00000036370 RRM 374 444
ENSTRUP00000036371 RRM 12 80
ENSTRUP00000036371 RRM 100 168
ENSTRUP00000036371 RRM 354 424
ENSTRUP00000036372 RRM 12 80
ENSTRUP00000036372 RRM 86 128
ENSTRUP00000036372 RRM 337 359
ENSTRUP00000036372 RRM 355 387
ENSTRUP00000036373 RRM 9 77
ENSTRUP00000036373 RRM 107 168
ENSTRUP00000036373 RRM 374 444

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.971
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.971
Q91579 Xenopus laevis Q91579 I 0.914
AAH72134 Xenopus laevis AAH72134 I 0.914
AAA81375 Xenopus laevis AAA81375 I 0.914
AAH57704 Xenopus laevis AAH57704 I 0.914
CELF3 Oryzias latipes ENSORLG00000010447 I 0.913
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.905
AAH46942 Xenopus laevis AAH46942 I 0.905
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.900
celf3 Danio rerio ENSDARG00000034668 I 0.900
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.895
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.895
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 0.895
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.895
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.895
CELF3 Canis familiaris ENSCAFG00000012794 I 0.895
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.895
CELF3 Equus caballus ENSECAG00000020365 I 0.895
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.895
CELF3 Homo sapiens ENSG00000159409 I 0.895
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.895
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.895
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.895
Celf3 Mus musculus ENSMUSG00000028137 I 0.895
CELF3 Danio rerio ENSDARG00000006983 I 0.886
CELF3 Sus scrofa ENSSSCG00000006618 I 0.876
CELF3 Procavia capensis ENSPCAG00000001623 I 0.867
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.862
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.862
CELF6 Meleagris gallopavo ENSMGAG00000001804 I 0.856
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.852
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.848
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.848
Celf4 Mus musculus ENSMUSG00000024268 I 0.843
BRUNOL5 Homo sapiens ENSG00000161082 D 0.843
celf5 Danio rerio ENSDARG00000071375 I 0.843
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.843
CELF4 Oryzias latipes ENSORLG00000008913 I 0.838
CELF5 Oryzias latipes ENSORLG00000004600 I 0.838
celf5 Xenopus tropicalis ENSXETG00000014344 I 0.833
ACH69785 Xenopus laevis ACH69785 I 0.829
CELF6 Sus scrofa ENSSSCG00000001928 I 0.819
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.819
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 0.819
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 0.819
CELF6 Bos taurus ENSBTAG00000014092 I 0.819
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.819
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 0.819
Celf6 Mus musculus ENSMUSG00000032297 I 0.819
CELF6 Felis catus ENSFCAG00000016249 I 0.819
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.814
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.814
HEXA Macaca mulatta ENSMMUG00000010687 I 0.814
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.814
BRUNOL6 Homo sapiens ENSG00000140488 D 0.814
ENSPPYG00000006615 Pongo pygmaeus ENSPPYG00000006615 I 0.810
CELF6 Loxodonta africana ENSLAFG00000020985 I 0.802
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.800
CELF3 Macaca mulatta ENSMMUG00000016952 I 0.790
CELF3 Oryzias latipes ENSORLG00000002630 I 0.777
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.773
Bm1_27610 Brugia malayi Bm1_27610 I 0.767
ACH69784 Xenopus laevis ACH69784 I 0.758
Celf6 Dipodomys ordii ENSDORG00000004882 I 0.757
ENSPPYG00000009118 Pongo pygmaeus ENSPPYG00000009118 I 0.754
CELF4 Pteropus vampyrus ENSPVAG00000009204 I 0.749
BRUNOL4 Homo sapiens ENSG00000101489 D 0.749
LOC100386457 Callithrix jacchus ENSCJAG00000021135 I 0.749
CELF4 Gorilla gorilla ENSGGOG00000013920 I 0.749
CELF4 Tursiops truncatus ENSTTRG00000016826 I 0.744
CELF3 Tetraodon nigroviridis ENSTNIG00000017546 N 0.742
CELF3 Pteropus vampyrus ENSPVAG00000015012 N 0.739
CRE09771 Caenorhabditis remanei CRE09771 I 0.739
CBG15358 Caenorhabditis briggsae CBG15358 I 0.739
unc-75 Caenorhabditis elegans C17D12.2 D 0.735
CELF4 Gasterosteus aculeatus ENSGACG00000008752 I 0.730
CELF3 Tursiops truncatus ENSTTRG00000009835 N 0.730
CELF3 Dasypus novemcinctus ENSDNOG00000011384 N 0.720
CELF3 Microcebus murinus ENSMICG00000010644 N 0.719
CELF6 Oryctolagus cuniculus ENSOCUG00000021663 I 0.719
CELF5 Macropus eugenii ENSMEUG00000013080 I 0.716
XP_001192920.1 Strongylocentrotus purpuratus XP_001192920.1 I 0.708
XP_781047.2 Strongylocentrotus purpuratus XP_781047.2 I 0.708
CELF3 Takifugu rubripes ENSTRUG00000012064 I 0.705
ENSCSAVG00000007538 Ciona savignyi ENSCSAVG00000007538 I 0.701
ENSCING00000001999 Ciona intestinalis ENSCING00000001999 I 0.701