PABPC3 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000011577 T42322_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.946
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.946
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.946
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.889
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.853
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000029262 RRM 13 83
ENSTRUP00000029262 RRM 101 169
ENSTRUP00000029262 RRM 193 262
ENSTRUP00000029262 RRM 296 364

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

172 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CAGL0C01419g Candida glabrata CAGL0C01419g N 0.000
KLLA0E19031g Kluyveromyces lactis KLLA0E19031g N 0.000
KLTH0H04906g Kluyveromyces thermotolerans KLTH0H04906g N 0.000
Kwal_11158 Kluyveromyces waltii Kwal_11158 N 0.000
SAKL0A05280g Lachancea kluyveri SAKL0A05280g N 0.000