PABPC3 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000011577 T42322_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.946
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.946
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.946
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.889
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.853
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000029262 RRM 13 83
ENSTRUP00000029262 RRM 101 169
ENSTRUP00000029262 RRM 193 262
ENSTRUP00000029262 RRM 296 364

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

172 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R010128 Ailuropoda melanoleuca Ame_R010128 I 0.000
Ame_R010681 Ailuropoda melanoleuca Ame_R010681 I 0.000
Ame_R015982 Ailuropoda melanoleuca Ame_R015982 I 0.000
KHDRBS2 Anolis carolinensis ENSACAG00000006691 I 0.000
KHDRBS1 Anolis carolinensis ENSACAG00000011693 I 0.000
KHDRBS3 Anolis carolinensis ENSACAG00000012042 I 0.000
A4FV24_BOVIN Bos taurus ENSBTAG00000002181 I 0.000
Q29RQ2_BOVIN Bos taurus ENSBTAG00000012497 I 0.000
KHDRBS2 Bos taurus ENSBTAG00000043990 I 0.000
KHDRBS3 Canis familiaris ENSCAFG00000001166 I 0.000
KHDRBS2 Canis familiaris ENSCAFG00000002470 I 0.000
KHDRBS1 Canis familiaris ENSCAFG00000010777 I 0.000
ENSCHOG00000006973 Choloepus hoffmanni ENSCHOG00000006973 I 0.000
LOC100395662 Callithrix jacchus ENSCJAG00000001766 I 0.000
LOC100399263 Callithrix jacchus ENSCJAG00000004331 I 0.000
LOC100414412 Callithrix jacchus ENSCJAG00000006580 I 0.000
KHDRBS3 Cavia porcellus ENSCPOG00000000342 I 0.000
KHDRBS1 Cavia porcellus ENSCPOG00000024148 I 0.000
KHDRBS2 Cavia porcellus ENSCPOG00000025621 I 0.000
khdrbs1a Danio rerio ENSDARG00000052856 I 0.000
khdrbs2 Danio rerio ENSDARG00000069469 I 0.000
khdrbs1b Danio rerio ENSDARG00000070475 I 0.000
ENSDARG00000078082 Danio rerio ENSDARG00000078082 I 0.000
KHDRBS2 Dasypus novemcinctus ENSDNOG00000014028 I 0.000
LOC100058116 Equus caballus ENSECAG00000010194 I 0.000
KHDRBS1 Equus caballus ENSECAG00000019346 I 0.000
LOC100056966 Equus caballus ENSECAG00000021541 I 0.000
KHDRBS2 Erinaceus europaeus ENSEEUG00000003986 I 0.000
KHDRBS3 Echinops telfairi ENSETEG00000004701 I 0.000
KHDRBS1 Felis catus ENSFCAG00000006511 I 0.000
KHDRBS2 Homo sapiens ENSG00000112232 D 0.000
KHDRBS1 Homo sapiens ENSG00000121774 D 0.000
KHDRBS3 Homo sapiens ENSG00000131773 D 0.000
KHDRBS2 Gasterosteus aculeatus ENSGACG00000006097 I 0.000
KHDRBS3 Gasterosteus aculeatus ENSGACG00000008847 I 0.000
KHDRBS1 Gasterosteus aculeatus ENSGACG00000009219 I 0.000
KHDR1_CHICK Gallus gallus ENSGALG00000003272 I 0.000
KHDRBS3 Gallus gallus ENSGALG00000016203 I 0.000
KHDRBS2 Gallus gallus ENSGALG00000016276 I 0.000
Q6J4Q8_9PRIM Gorilla gorilla ENSGGOG00000000940 I 0.000
KHDRBS1 Gorilla gorilla ENSGGOG00000008633 I 0.000
KHDRBS2 Gorilla gorilla ENSGGOG00000025068 I 0.000
KHDRBS3 Loxodonta africana ENSLAFG00000004849 I 0.000
KHDRBS2 Loxodonta africana ENSLAFG00000006655 I 0.000
KHDRBS1 Loxodonta africana ENSLAFG00000009414 I 0.000
KHDRBS1 Meleagris gallopavo ENSMGAG00000004455 I 0.000
KHDRBS3 Meleagris gallopavo ENSMGAG00000012888 I 0.000
KHDRBS2 Meleagris gallopavo ENSMGAG00000013877 I 0.000
KHDRBS2 Myotis lucifugus ENSMLUG00000005484 I 0.000
KHDRBS2 Macaca mulatta ENSMMUG00000003329 I 0.000
Q6J4Q6_MACMU Macaca mulatta ENSMMUG00000022248 I 0.000
KHDRBS1 Macaca mulatta ENSMMUG00000023438 I 0.000
KHDRBS3 Monodelphis domestica ENSMODG00000000975 I 0.000
XM_001365874.1 Monodelphis domestica ENSMODG00000017551 I 0.000
KHDRBS2 Monodelphis domestica ENSMODG00000018714 I 0.000
Khdrbs3 Mus musculus ENSMUSG00000022332 I 0.000
Khdrbs2 Mus musculus ENSMUSG00000026058 I 0.000
Khdrbs1 Mus musculus ENSMUSG00000028790 D 0.000
KHDRBS1 Ornithorhynchus anatinus ENSOANG00000012357 I 0.000
KHDRBS3 Ornithorhynchus anatinus ENSOANG00000014074 I 0.000
KHDRBS3 Oryctolagus cuniculus ENSOCUG00000000743 I 0.000
KHDRBS1 Oryctolagus cuniculus ENSOCUG00000007654 I 0.000
KHDRBS2 Oryctolagus cuniculus ENSOCUG00000012344 I 0.000
KHDRBS3 Otolemur garnettii ENSOGAG00000005150 I 0.000
KHDRBS3 Ochotona princeps ENSOPRG00000000404 I 0.000
KHDRBS1 Ochotona princeps ENSOPRG00000005131 I 0.000
KHDRBS2 Oryzias latipes ENSORLG00000010165 I 0.000
KHDRBS3 Oryzias latipes ENSORLG00000013441 I 0.000
KHDRBS1 Oryzias latipes ENSORLG00000017156 I 0.000
KHDRBS1 Oryzias latipes ENSORLG00000020884 I 0.000
KHDRBS2 Procavia capensis ENSPCAG00000001426 I 0.000
KHDRBS1 Procavia capensis ENSPCAG00000009844 I 0.000
ENSPPYG00000001605 Pongo pygmaeus ENSPPYG00000001605 I 0.000
KHDRBS1 Pan troglodytes ENSPTRG00000000469 I 0.000
KHDRBS2 Pan troglodytes ENSPTRG00000018311 I 0.000
Q6J4Q9_PANTR Pan troglodytes ENSPTRG00000020608 I 0.000
KHDRBS1 Pteropus vampyrus ENSPVAG00000013289 I 0.000
KHDRBS3 Pteropus vampyrus ENSPVAG00000017021 I 0.000
Khdrbs3 Rattus norvegicus ENSRNOG00000009539 I 0.000
Khdrbs2 Rattus norvegicus ENSRNOG00000012284 I 0.000
KHDRBS1 Sorex araneus ENSSARG00000008479 I 0.000
KHDRBS3 Sorex araneus ENSSARG00000011751 I 0.000
KHDRBS2 Sus scrofa ENSSSCG00000001490 I 0.000
KHDRBS3 Sus scrofa ENSSSCG00000005941 I 0.000
KHDRBS3 Spermophilus tridecemlineatus ENSSTOG00000008710 I 0.000
KHDRBS1 Spermophilus tridecemlineatus ENSSTOG00000014138 I 0.000
KHDRBS3 Tupaia belangeri ENSTBEG00000004773 I 0.000
KHDRBS1 Tupaia belangeri ENSTBEG00000016857 I 0.000
KHDRBS3 Taeniopygia guttata ENSTGUG00000012611 I 0.000
KHDRBS2 Taeniopygia guttata ENSTGUG00000012786 I 0.000
KHDRBS1 Taeniopygia guttata ENSTGUG00000017346 I 0.000
KHDRBS1 Tetraodon nigroviridis ENSTNIG00000013071 I 0.000
KHDRBS3 Tetraodon nigroviridis ENSTNIG00000014021 I 0.000
KHDRBS1 Tetraodon nigroviridis ENSTNIG00000017471 I 0.000
KHDRBS1 Takifugu rubripes ENSTRUG00000010001 I 0.000
KHDRBS1 Takifugu rubripes ENSTRUG00000012039 I 0.000
KHDRBS3 Takifugu rubripes ENSTRUG00000013451 I 0.000
KHDRBS2 Takifugu rubripes ENSTRUG00000015760 I 0.000
KHDRBS3 Tarsius syrichta ENSTSYG00000004106 I 0.000
KHDRBS1 Tarsius syrichta ENSTSYG00000004921 I 0.000
KHDRBS2 Tarsius syrichta ENSTSYG00000007203 I 0.000
KHDRBS3 Tursiops truncatus ENSTTRG00000001270 I 0.000
KHDRBS2 Tursiops truncatus ENSTTRG00000005591 I 0.000
KHDRBS1 Tursiops truncatus ENSTTRG00000009637 I 0.000
KHDRBS2 Vicugna pacos ENSVPAG00000001469 I 0.000
KHDRBS1 Vicugna pacos ENSVPAG00000006966 I 0.000
khdrbs2 Xenopus tropicalis ENSXETG00000004451 I 0.000
khdrbs1 Xenopus tropicalis ENSXETG00000005246 I 0.000
khdrbs3 Xenopus tropicalis ENSXETG00000009227 I 0.000
e_gw.41.46.1 Nematostella vectensis e_gw.41.46.1 I 0.000
fgenesh2_pg.scaffold_166000064 Branchiostoma floridae fgenesh2_pg.scaffold_166000064 I 0.000
gw.576.16.1 Branchiostoma floridae gw.576.16.1 I 0.000