PABPC3 (Homo sapiens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSG00000151846 T37281_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC3
M144_0.6		 Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.935
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.935
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.935
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.814
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M144_0.6 RRM 13 83
M144_0.6 RRM 101 169
M144_0.6 RRM 193 262
M144_0.6 RRM 296 364

RNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000281589 RRM 13 83
ENSP00000281589 RRM 101 169
ENSP00000281589 RRM 193 262
ENSP00000281589 RRM 296 364

Links

Other RRM family RBPs
Other Homo sapiens RBPs

140 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.975
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.964
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.946
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.935
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.935
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.935
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.935
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.935
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.935
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.935
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.935
PABPC1 Homo sapiens ENSG00000070756 D 0.935
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.935
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.935
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.935
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.932
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.932
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.932
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.932
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.932
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.932
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.925
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.921
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.914
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.907
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.903
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.892
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.889
pabpc1a Danio rerio ENSDARG00000017219 I 0.889
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.889
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.885
Q6IP09 Xenopus laevis Q6IP09 I 0.885
AAH72110 Xenopus laevis AAH72110 I 0.885
AAI08463 Xenopus laevis AAI08463 I 0.885
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.885
P20965 Xenopus laevis P20965 I 0.882
CAA40721 Xenopus laevis CAA40721 I 0.882
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.882
AAH52100 Xenopus laevis AAH52100 I 0.882
AAA60936 Xenopus laevis AAA60936 I 0.878
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.871
pabpc1b Danio rerio ENSDARG00000021140 I 0.868
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.867
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.864
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.856
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.853
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.853
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.853
AAH73435 Xenopus laevis AAH73435 I 0.835
PABPC4 Gallus gallus ENSGALG00000003800 I 0.828
LOC100056021 Equus caballus ENSECAG00000020699 I 0.824
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.824
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.824
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.821
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.821
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.818
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.817
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.817
LOC100054235 Equus caballus ENSECAG00000009396 I 0.817
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.817
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.817
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.817
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.817
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.817
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.814
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.814
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.814
PABPC4 Homo sapiens ENSG00000090621 D 0.814
pabpc4 Danio rerio ENSDARG00000059259 I 0.814
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.814
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.814
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.810
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.810
Gm10110 Mus musculus ENSMUSG00000062093 I 0.810
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.806
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.806
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.806
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.806
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.803
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.803
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.803
PABPC1L Gallus gallus ENSGALG00000004123 I 0.803
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.803
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.799
AAH80020 Xenopus laevis AAH80020 I 0.796
Q98SP8 Xenopus laevis Q98SP8 I 0.796
AAK29408 Xenopus laevis AAK29408 I 0.796
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.792
Q6GR16 Xenopus laevis Q6GR16 I 0.789
AAH71118 Xenopus laevis AAH71118 I 0.789
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.782
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.781
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.778
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.778
pabpc1l Danio rerio ENSDARG00000002597 I 0.774
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.774
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.774
PABPC1L Bos taurus ENSBTAG00000016849 I 0.763
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.763
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.760
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.760
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.756
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.756
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.756
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.753
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.753
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.749
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.749
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.749
ENSMODG00000012040 Monodelphis domestica ENSMODG00000012040 I 0.749
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.746
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.746
PABPC1L Homo sapiens ENSG00000101104 I 0.746
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.746
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.742
LOC100070836 Equus caballus ENSECAG00000022681 I 0.742
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.742
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.742
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.738
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.735
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.735
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.735
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.731
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.731
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.728
ENSMLUG00000012245 Myotis lucifugus ENSMLUG00000012245 I 0.728
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.728
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.724
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.717
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.717
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.717
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.717
PHUM617090 Pediculus humanus PHUM617090 I 0.714
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.713
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.710
ISCW014211 Ixodes scapularis ISCW014211 I 0.708
AGAP011092 Anopheles gambiae AGAP011092 I 0.707
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.703
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.703
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.703