CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM41
(
Tarsius syrichta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTSYG00000006980
T42453_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
RBM41
M051_0.6
Homo sapiens
WUACWUK
RNAcompete
Ray et al.(2013)
RNCMPT00053
0.930
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTSYP00000006356
RRM
136
206
LYLKNLSPRVTERDLVSLFARFQEKKGPAIQFRMMTGRMRGQAFITFPNKEIAQQALHLVNGYNLRGKVLV
Links
Other
RRM
family RBPs
Other
Tarsius syrichta
RBPs
27 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
EFA75926.1
Polysphondylium pallidum
EFA75926.1
N
0.000
ppa016726m
Prunus persica
ppa016726m
N
0.000
ppa019720m
Prunus persica
ppa019720m
N
0.000
ppa021588m
Prunus persica
ppa021588m
N
0.000
ppa022673m
Prunus persica
ppa022673m
N
0.000
ppa024392m
Prunus persica
ppa024392m
N
0.000
ppa026182m
Prunus persica
ppa026182m
N
0.000
ppa026240m
Prunus persica
ppa026240m
N
0.000