CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HNRNPA3
(
Tarsius syrichta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTSYG00000012949
T42508_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTSYP00000011888
RRM
69
106
XXXXXXSRGFGFVTYSCVEEGDAAMCARPHKVDGRVVE
ENSTSYP00000011888
RRM
128
197
IFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCE
Links
Other
RRM
family RBPs
Other
Tarsius syrichta
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AMAG_03225
Allomyces macrogynus
AMAG_03225
N
0.000
NFIA_109800
Neosartorya fischeri
CADNFIAG00009499
N
0.000
estExt_fgenesh1_pg.C_90140
Trichoderma atroviride
estExt_fgenesh1_pg.C_90140
N
0.000
e_gw1.1.997.1
Trichoderma reesei
e_gw1.1.997.1
N
0.000
e_gw1.10.335.1
Mucor circinelloides
e_gw1.10.335.1
N
0.000
e_gw1.11.592.1
Nectria haematococca
e_gw1.11.592.1
N
0.000
e_gw1.17.425.1
Trichoderma virens
e_gw1.17.425.1
N
0.000
fgenesh1_pg.C_scaffold_1000567
Sporobolomyces roseus
fgenesh1_pg.C_scaffold_1000567
N
0.000
fgenesh1_pg.C_scaffold_2000511
Cryphonectria parasitica
fgenesh1_pg.C_scaffold_2000511
N
0.000
fgenesh1_pm.00609_#_590
Aspergillus carbonarius
fgenesh1_pm.00609_#_590
N
0.000
FGSG_04392
Fusarium graminearum
FGSG_04392
N
0.000
FVEG_11271
Fusarium verticillioides
FVEG_11271
N
0.000
GLRG_08650
Colletotrichum graminicola
GLRG_08650
N
0.000
GSTUMT00006382001
Tuber melanosporum
GSTUMT00006382001
N
0.000
MGG_12370
Magnaporthe oryzae
MGG_12370
N
0.000
PABG_04180
Paracoccidioides brasiliensis
PABG_04180
N
0.000
SS1G_03893
Sclerotinia sclerotiorum
SS1G_03893
N
0.000