CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GJ21111
(
Drosophila virilis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0208244
T44093_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0235528
RRM
51
120
LIVRNISYKSTDEALRQYFGQWGTLEDVHILKRGDGKLVGCAFVQYETVNQASKAILHANGKELLGRKVF
FBpp0235528
RRM
243
313
VFIKNVPFDAEDGDLRKVCRKFGVVQYAIINRQAVSGHSKGTAFVKFKAKESADLCLQAGTEFKLMDEVLD
FBpp0235528
RRM
391
468
LSIHNLPLNYDNEKLKQMALTYTGFRPHECRVMRDQKVTPEHPQGKSKGFGFLSFDTHQRALAALRKLNNNPSIFGTQ
Links
Other
RRM
family RBPs
Other
Drosophila virilis
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GA18446-RA
Drosophila pseudoobscura
FBgn0078448
N
0.854
GF11912
Drosophila ananassae
FBgn0088951
N
0.914
GG19902
Drosophila erecta
FBgn0112102
N
0.922
GH21568
Drosophila grimshawi
FBgn0129029
N
0.909
GI19540
Drosophila mojavensis
FBgn0142277
N
0.945
GL11105
Drosophila persimilis
FBgn0148715
N
0.854
GM11803
Drosophila sechellia
FBgn0166745
N
0.922
GD24928
Drosophila simulans
FBgn0196242
N
0.922
GK21872
Drosophila willistoni
FBgn0223857
N
0.895
GE11426
Drosophila yakuba
FBgn0229232
N
0.922
CG4806
Drosophila melanogaster
FBgn0260456
N
0.922