rsp-3 (Caenorhabditis elegans)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Y111B2A.18 T46308_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF1
M273_0.6 		Homo sapiens ACGCGCA SELEX
Cook et al.(2011)
243_7543047 		0.735
SRSF1
M272_0.6 		Homo sapiens RGAAGAAC SELEX
Cook et al.(2011)
242_7543047 		0.735
SRSF1
M270_0.6 		Homo sapiens Sequence logo not available GAAGAA CLIP-seq
Cook et al.(2011)
229_19116412 		0.735
SRSF1
M154_0.6 		Homo sapiens GGRGGAV RNAcompete
Ray et al.(2013)
RNCMPT00163 		0.735
SRSF1
M106_0.6 		Homo sapiens AGGASM RNAcompete
Ray et al.(2013)
RNCMPT00110 		0.735
SRSF1
M105_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00109 		0.735
SRSF1
M104_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00108 		0.735
SRSF1
M103_0.6 		Homo sapiens GGAGGA RNAcompete
Ray et al.(2013)
RNCMPT00107 		0.735
SRSF1
M102_0.6 		Homo sapiens GRAGGA RNAcompete
Ray et al.(2013)
RNCMPT00106 		0.735
SRSF1
M351_0.6 		Homo sapiens AGGACAGAGC SELEX
Cook et al.(2011)
952_7543047 		0.735
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Y111B2A.18.1 RRM 11 77
Y111B2A.18.1 RRM 125 188
Y111B2A.18.2 RRM 11 77
Y111B2A.18.2 RRM 125 188
Y111B2A.18.3 RRM 11 77
Y111B2A.18.3 RRM 125 188

Links

Other RRM family RBPs
Other Caenorhabditis elegans RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28611.m000102 Ricinus communis 28611.m000102 N 0.000
cassava30271.valid.m1 Manihot esculenta cassava30271.valid.m1 N 0.000
cassava30272.valid.m1 Manihot esculenta cassava30272.valid.m1 N 0.000
Cucsa.173560 Cucumis sativus Cucsa.173560 N 0.000
Glyma08g35510.1 Glycine max Glyma08g35510.1 N 0.000
Glyma16g18030.1 Glycine max Glyma16g18030.1 N 0.000
GSVIVG00013204001 Vitis vinifera GSVIVG00013204001 N 0.000
mgf004650m Mimulus guttatus mgf004650m N 0.000
PK18318.1 Cannabis sativa PK18318.1 N 0.000
POPTR_0004s08000 Populus trichocarpa POPTR_0004s08000 N 0.000
B9MWV7_POPTR Populus trichocarpa POPTR_0017s02120 N 0.000
ppa024223m Prunus persica ppa024223m N 0.000