rsp-3 (Caenorhabditis elegans)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Y111B2A.18 T46308_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF1
M273_0.6 		Homo sapiens ACGCGCA SELEX
Cook et al.(2011)
243_7543047 		0.735
SRSF1
M272_0.6 		Homo sapiens RGAAGAAC SELEX
Cook et al.(2011)
242_7543047 		0.735
SRSF1
M270_0.6 		Homo sapiens Sequence logo not available GAAGAA CLIP-seq
Cook et al.(2011)
229_19116412 		0.735
SRSF1
M154_0.6 		Homo sapiens GGRGGAV RNAcompete
Ray et al.(2013)
RNCMPT00163 		0.735
SRSF1
M106_0.6 		Homo sapiens AGGASM RNAcompete
Ray et al.(2013)
RNCMPT00110 		0.735
SRSF1
M105_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00109 		0.735
SRSF1
M104_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00108 		0.735
SRSF1
M103_0.6 		Homo sapiens GGAGGA RNAcompete
Ray et al.(2013)
RNCMPT00107 		0.735
SRSF1
M102_0.6 		Homo sapiens GRAGGA RNAcompete
Ray et al.(2013)
RNCMPT00106 		0.735
SRSF1
M351_0.6 		Homo sapiens AGGACAGAGC SELEX
Cook et al.(2011)
952_7543047 		0.735
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Y111B2A.18.1 RRM 11 77
Y111B2A.18.1 RRM 125 188
Y111B2A.18.2 RRM 11 77
Y111B2A.18.2 RRM 125 188
Y111B2A.18.3 RRM 11 77
Y111B2A.18.3 RRM 125 188

Links

Other RRM family RBPs
Other Caenorhabditis elegans RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CRE13382 Caenorhabditis remanei CRE13382 I 0.977
CBN06053 Caenorhabditis brenneri CBN06053 I 0.969
CJA01159 Caenorhabditis japonica CJA01159 I 0.969
CBG03563 Caenorhabditis briggsae CBG03563 I 0.931
srsf1a Danio rerio ENSDARG00000057691 I 0.758
LOAG_10275 Loa loa LOAG_10275 I 0.748
SRSF1 Anolis carolinensis ENSACAG00000005542 I 0.742
Ppa-rsp-3 Pristionchus pacificus PPA25378 I 0.742
e_gw1.83.149.1 Daphnia pulex e_gw1.83.149.1 I 0.740
Bm1_45780 Brugia malayi Bm1_45780 N 0.740
ENSCING00000007375 Ciona intestinalis ENSCING00000007375 I 0.740
fgenesh1_pg.scaffold_37000136 Nematostella vectensis fgenesh1_pg.scaffold_37000136 I 0.737
SRSF1 Choloepus hoffmanni ENSCHOG00000001899 I 0.735
LOC100056763 Equus caballus ENSECAG00000016654 I 0.735
SRSF1 Homo sapiens ENSG00000136450 D 0.735
SRSF1 Loxodonta africana ENSLAFG00000025743 I 0.735
D4A9L2_RAT Rattus norvegicus ENSRNOG00000042643 I 0.735
SRSF1 Sus scrofa ENSSSCG00000017626 I 0.735
SRSF1 Tarsius syrichta ENSTSYG00000013899 I 0.735
srsf1 Xenopus tropicalis ENSXETG00000008954 I 0.735
SRSF1 Pan troglodytes ENSPTRG00000009443 I 0.735
ENSPPYG00000008240 Pongo pygmaeus ENSPPYG00000008240 I 0.735
SRSF1 Canis familiaris ENSCAFG00000017430 I 0.735
SRSF1 Macaca mulatta ENSMMUG00000004725 I 0.735
Srsf1 Mus musculus ENSMUSG00000018379 I 0.735
SRSF1 Procavia capensis ENSPCAG00000005199 I 0.735
SRSF1 Gorilla gorilla ENSGGOG00000004386 I 0.735
SRSF1 Cavia porcellus ENSCPOG00000011760 I 0.735
AAI23123 Xenopus laevis AAI23123 I 0.735
Ame_R003447 Ailuropoda melanoleuca Ame_R003447 I 0.735
AAI28932 Xenopus laevis AAI28932 I 0.735
fgenesh2_pg.scaffold_118000083 Branchiostoma floridae fgenesh2_pg.scaffold_118000083 I 0.735
AAH42354 Xenopus laevis AAH42354 I 0.735
SFRS1_BOVIN Bos taurus ENSBTAG00000014766 I 0.735
LOAG_04332 Loa loa LOAG_04332 N 0.733
ISCW014398 Ixodes scapularis ISCW014398 I 0.733
SRSF1 Vicugna pacos ENSVPAG00000010094 I 0.727
ENSCSAVG00000006093 Ciona savignyi ENSCSAVG00000006093 I 0.725
Sjc_0030490 Schistosoma japonicum Sjc_0030490 I 0.722
Smp_185230 Schistosoma mansoni Smp_185230 I 0.722
ENSMUSG00000090049 Mus musculus ENSMUSG00000090049 I 0.720
ENSOCUG00000017678 Oryctolagus cuniculus ENSOCUG00000017678 I 0.720
SRSF1 Sorex araneus ENSSARG00000010949 I 0.720
e_gw.425.15.1 Branchiostoma floridae e_gw.425.15.1 I 0.720
ENSTRUG00000003691 Takifugu rubripes ENSTRUG00000003691 I 0.720
ENSTNIG00000016223 Tetraodon nigroviridis ENSTNIG00000016223 I 0.720
SRSF1 Spermophilus tridecemlineatus ENSSTOG00000000243 I 0.720
SRSF1 Monodelphis domestica ENSMODG00000014781 I 0.720
LOC100392422 Callithrix jacchus ENSCJAG00000035311 I 0.720
SRSF1 Erinaceus europaeus ENSEEUG00000009255 I 0.720
SRSF1 Myotis lucifugus ENSMLUG00000011040 I 0.720
SRSF1 Microcebus murinus ENSMICG00000013639 I 0.720
nasonia_NCBI_hmm519234 Nasonia vitripennis nasonia_NCBI_hmm519234 I 0.718
amel4_ncbi_hmm5595 Apis mellifera amel4_ncbi_hmm5595 I 0.718
Minc04015 Meloidogyne incognita Minc04015 I 0.714
Minc06188 Meloidogyne incognita Minc06188 I 0.714
estExt_fgenesh2_pm.C_1180016 Branchiostoma floridae estExt_fgenesh2_pm.C_1180016 I 0.712
gw1.25.268.1 Lottia gigantea gw1.25.268.1 I 0.712
ENSGACG00000020621 Gasterosteus aculeatus ENSGACG00000020621 I 0.712
ENSGACG00000011094 Gasterosteus aculeatus ENSGACG00000011094 I 0.712
SRSF1 Echinops telfairi ENSETEG00000005349 I 0.712
DGIL_AUG5s14011g9t1 Acyrtosiphon pisum DGIL_AUG5s14011g9t1 I 0.710
ENSORLG00000004580 Oryzias latipes ENSORLG00000004580 I 0.709
SRSF1 Tupaia belangeri ENSTBEG00000015378 I 0.705
LOC100392422 Callithrix jacchus ENSCJAG00000014041 I 0.705
AAEL006473 Aedes aegypti AAEL006473 I 0.702