CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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114532
(
Helobdella robusta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
114532
T48494_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
114532
RRM
154
222
IFCMQLSTKLRPIDLKDFFGKLGKIRDVRLIMDNRSRRSKGIAYIEFQDTESVAKALELSGQRLLGVPI
114532
RRM
253
323
LYIGSLHYNITEEMLKGIFEPFGPIDELKLMRDHSTGRSLGYGFLQFKRGDDGKKALEQLNGFELAGRPMK
114532
RRM
430
486
LKDDVIEECNKHGGVLHIHVDKTSAQGHVYVKCPSIASAMSSVNALHGRFFAGKQIT
Links
Other
RRM
family RBPs
Other
Helobdella robusta
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
amel4_ncbi_hmm44335
Apis mellifera
amel4_ncbi_hmm44335
N
0.000
BGIBMGA006328
Bombyx mori
BGIBMGA006328
N
0.000
CPIJ002709
Culex quinquefasciatus
CPIJ002709
N
0.000
CpipJ_CPIJ002709
Culex pipiens
CpipJ_CPIJ002709
N
0.000
DGIL_AUG5s5041g4t3
Acyrtosiphon pisum
DGIL_AUG5s5041g4t3
N
0.000
mask
Drosophila melanogaster
FBgn0043884
N
0.000
GF16118
Drosophila ananassae
FBgn0093140
N
0.000
GG11270
Drosophila erecta
FBgn0103571
N
0.000
GH18670
Drosophila grimshawi
FBgn0126137
N
0.000
GJ10528
Drosophila virilis
FBgn0197808
N
0.000
GK11389
Drosophila willistoni
FBgn0213400
N
0.000
GE23462
Drosophila yakuba
FBgn0240644
N
0.000
GA27251-RA
Drosophila pseudoobscura
FBgn0248619
N
0.000
PHUM473040
Pediculus humanus
PHUM473040
N
0.000