RBM23 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000009919 T40173_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000012443 RRM 160 228
ENSORLP00000012443 RRM 259 329
ENSORLP00000012443 RRM 450 505
ENSORLP00000012444 RRM 140 208
ENSORLP00000012444 RRM 239 309
ENSORLP00000012444 RRM 430 485
ENSORLP00000012446 RRM 159 227
ENSORLP00000012446 RRM 258 328
ENSORLP00000012446 RRM 449 504

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

66 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
rbm39a Danio rerio ENSDARG00000011613 N 0.929
RBM23 Tetraodon nigroviridis ENSTNIG00000017904 N 0.923
RBM39 Anolis carolinensis ENSACAG00000006436 N 0.919
RBM23 Takifugu rubripes ENSTRUG00000011352 N 0.918
RBM23 Gasterosteus aculeatus ENSGACG00000003376 N 0.918
RBM39 Gallus gallus ENSGALG00000001550 N 0.914
RBM39 Taeniopygia guttata ENSTGUG00000003048 N 0.914
Rbm39 Mus musculus ENSMUSG00000027620 N 0.909
B7NZJ5_RABIT Oryctolagus cuniculus ENSOCUG00000007050 N 0.909
RBM39 Equus caballus ENSECAG00000013423 N 0.909
RBM39 Homo sapiens ENSG00000131051 N 0.909
RBM39 Loxodonta africana ENSLAFG00000010346 N 0.909
RBM39 Canis familiaris ENSCAFG00000008327 N 0.909
RBM39 Microcebus murinus ENSMICG00000001668 N 0.909
Q2HJD8_BOVIN Bos taurus ENSBTAG00000003949 N 0.909
RBM39 Tarsius syrichta ENSTSYG00000005605 N 0.909
Rbm39 Rattus norvegicus ENSRNOG00000019848 N 0.909
RBM39 Pteropus vampyrus ENSPVAG00000014944 N 0.909
RBM39 Pan troglodytes ENSPTRG00000013449 N 0.909
RBM39 Sorex araneus ENSSARG00000007673 N 0.909
RBM39 Sus scrofa ENSSSCG00000007309 N 0.909
RBM39 Tursiops truncatus ENSTTRG00000017039 N 0.909
ENSPPYG00000010963 Pongo pygmaeus ENSPPYG00000010963 N 0.909
B0KWM7_CALJA Callithrix jacchus ENSCJAG00000017535 N 0.909
Ame_R004270 Ailuropoda melanoleuca Ame_R004270 N 0.909
RBM39 Meleagris gallopavo ENSMGAG00000001509 N 0.909
RBM23 Oryzias latipes ENSORLG00000010370 N 0.909
RBM39 Monodelphis domestica ENSMODG00000001557 N 0.900
rbm39 Xenopus tropicalis ENSXETG00000007434 N 0.894
AAH77813 Xenopus laevis AAH77813 N 0.889
RBM39 Gorilla gorilla ENSGGOG00000003950 N 0.884
rbm39b Danio rerio ENSDARG00000041853 N 0.883
AAH75146 Xenopus laevis AAH75146 N 0.879
RBM23 Gasterosteus aculeatus ENSGACG00000002797 N 0.879
RBM23 Tetraodon nigroviridis ENSTNIG00000005223 N 0.872
RBM39 Cavia porcellus ENSCPOG00000014625 N 0.839
RBM39 Otolemur garnettii ENSOGAG00000011227 N 0.833
RBM39 Tupaia belangeri ENSTBEG00000017320 N 0.807
RBM39 Procavia capensis ENSPCAG00000008764 N 0.803
ENSCPOG00000021775 Cavia porcellus ENSCPOG00000021775 N 0.803
RBM39 Echinops telfairi ENSETEG00000016295 N 0.803
CPIJ019416 Culex quinquefasciatus CPIJ019416 N 0.768
CpipJ_CPIJ014704 Culex pipiens CpipJ_CPIJ014704 N 0.768
CpipJ_CPIJ019416 Culex pipiens CpipJ_CPIJ019416 N 0.768
CPIJ014704 Culex quinquefasciatus CPIJ014704 N 0.768
estExt_Genewise1Plus.C_150014 Daphnia pulex estExt_Genewise1Plus.C_150014 N 0.766
AAEL005046 Aedes aegypti AAEL005046 N 0.756
estExt_Genewise1.C_sca_90322 Lottia gigantea estExt_Genewise1.C_sca_90322 N 0.753
amel4_ncbi_hmm11379 Apis mellifera amel4_ncbi_hmm11379 N 0.753
PHUM394230 Pediculus humanus PHUM394230 N 0.747
AGAP008433 Anopheles gambiae AGAP008433 N 0.747
DGIL_AUG5s7518g10t1 Acyrtosiphon pisum DGIL_AUG5s7518g10t1 N 0.735
GK15272 Drosophila willistoni FBgn0217277 N 0.734
GG10454 Drosophila erecta FBgn0102763 N 0.727
GF14957 Drosophila ananassae FBgn0091982 N 0.727
CG11266 Drosophila melanogaster FBgn0031883 N 0.727
GD23448 Drosophila simulans FBgn0194830 N 0.727
GM16278 Drosophila sechellia FBgn0171194 N 0.727
GE14328 Drosophila yakuba FBgn0231943 N 0.727
GH13506 Drosophila grimshawi FBgn0120982 N 0.725
GI10246 Drosophila mojavensis FBgn0133011 N 0.724
GA10876-RA Drosophila pseudoobscura FBgn0070932 N 0.722
GJ18017 Drosophila virilis FBgn0205182 N 0.716
e_gw.57.85.1 Branchiostoma floridae e_gw.57.85.1 N 0.711
114532 Helobdella robusta 114532 N 0.701