CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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97663
(
Helobdella robusta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
97663
T48914_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
97663
RRM
114
183
LIISNLDFGVNDSDIKELFSEFGMLKKAAVHYDFSGRSQGTAEVIFASKQAALQAMNRYNYIPLDGRPMK
Links
Other
RRM
family RBPs
Other
Helobdella robusta
RBPs
33 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os01g16160
Oryza sativa
LOC_Os01g16160
N
0.000
LOC_Os01g33460
Oryza sativa
LOC_Os01g33460
N
0.000
LOC_Os02g19620
Oryza sativa
LOC_Os02g19620
N
0.000
LOC_Os02g34660
Oryza sativa
LOC_Os02g34660
N
0.000
LOC_Os02g39780
Oryza sativa
LOC_Os02g39780
N
0.000
LOC_Os02g49120
Oryza sativa
LOC_Os02g49120
N
0.000
LOC_Os03g13680
Oryza sativa
LOC_Os03g13680
N
0.000
LOC_Os03g33530
Oryza sativa
LOC_Os03g33530
N
0.000
LOC_Os03g35788
Oryza sativa
LOC_Os03g35788
N
0.000
LOC_Os03g41840
Oryza sativa
LOC_Os03g41840
N
0.000
LOC_Os04g08784
Oryza sativa
LOC_Os04g08784
N
0.000
LOC_Os04g12410
Oryza sativa
LOC_Os04g12410
N
0.000
LOC_Os04g17300
Oryza sativa
LOC_Os04g17300
N
0.000
LOC_Os04g18770
Oryza sativa
LOC_Os04g18770
N
0.000
LOC_Os05g08880
Oryza sativa
LOC_Os05g08880
N
0.000
LOC_Os06g23890
Oryza sativa
LOC_Os06g23890
N
0.000
LOC_Os06g39160
Oryza sativa
LOC_Os06g39160
N
0.000
LOC_Os07g11240
Oryza sativa
LOC_Os07g11240
N
0.000
LOC_Os07g22430
Oryza sativa
LOC_Os07g22430
N
0.000
LOC_Os08g29700
Oryza sativa
LOC_Os08g29700
N
0.000
LOC_Os08g39760
Oryza sativa
LOC_Os08g39760
N
0.000
LOC_Os09g07220
Oryza sativa
LOC_Os09g07220
N
0.000
LOC_Os09g08020
Oryza sativa
LOC_Os09g08020
N
0.000
LOC_Os10g01020
Oryza sativa
LOC_Os10g01020
N
0.000