CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh1_pg.C_10164
(
Neurospora tetrasperma
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_fgenesh1_pg.C_10164
T50452_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh1_pg.C_10164
RRM
474
523
TECGEKYGRVMRLFVETEGRRVFIRFTDGVSALRAVNALEGRIFNGNAIV
Links
Other
RRM
family RBPs
Other
Neurospora tetrasperma
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh2_pg.C_11051
Neurospora discreta
estExt_fgenesh2_pg.C_11051
N
0.960
estExt_Genewise1.C_70446
Cryphonectria parasitica
estExt_Genewise1.C_70446
N
0.740
FOXG_05320
Fusarium oxysporum
FOXG_05320
N
0.740
FVEG_02810
Fusarium verticillioides
FVEG_02810
N
0.720
GLRG_07477
Colletotrichum graminicola
GLRG_07477
N
0.706
NCU08942
Neurospora crassa
NCU08942
N
1.000