CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
estExt_fgenesh3_pg.C_10163
(
Postia placenta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_fgenesh3_pg.C_10163
T50967_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh3_pg.C_10163
RRM
120
189
LFIARLHKSATDNDLRREFEGFGSIERVRIVRDKKGRSRGYAFIVFERERDMKAAYKESDRLHIMGKRVL
Links
Other
RRM
family RBPs
Other
Postia placenta
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CC1G_12379
Coprinopsis cinerea
CC1G_12379
N
0.886
estExt_fgenesh2_pm.C_110163
Heterobasidion annosum
estExt_fgenesh2_pm.C_110163
N
0.814
fgenesh1_pg.C_scaffold_7000153
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_7000153
N
0.957
fgenesh1_pm.C_scaffold_5000207
Schizophyllum commune
fgenesh1_pm.C_scaffold_5000207
N
0.800
fgenesh2_pm.3_#_206
Agaricus bisporus
fgenesh2_pm.3_#_206
N
0.857
fgenesh3_pm.C_scaffold_11000048
Laccaria bicolor
fgenesh3_pm.C_scaffold_11000048
N
0.857
genemark.9242_g
Pleurotus ostreatus
genemark.9242_g
N
0.857
gw1.448.5.1
Postia placenta
gw1.448.5.1
N
0.718