CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh3_pg.C_140043
(
Postia placenta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_fgenesh3_pg.C_140043
T50970_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh3_pg.C_140043
RRM
112
181
LFVGDLSNDVSDDVLANAFNQYTSFQKARVIRDRLSGKAKYGFVAFSDPEDFLKAWKEMDGKYVGNRPVK
Links
Other
RRM
family RBPs
Other
Postia placenta
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CC1G_00345
Coprinopsis cinerea
CC1G_00345
N
0.829
CNBG_2125
Cryptococcus neoformans
CNBG_2125
N
0.700
estExt_fgenesh1_pm.C_10202
Schizophyllum commune
estExt_fgenesh1_pm.C_10202
N
0.900
estExt_fgenesh2_kg.C_41440
Serpula lacrymans
estExt_fgenesh2_kg.C_41440
N
0.957
estExt_Genewise1_worm.C_40476
Laccaria bicolor
estExt_Genewise1_worm.C_40476
N
0.971
e_gw1.4.964.1
Heterobasidion annosum
e_gw1.4.964.1
N
0.957
fgenesh2_kg.4_#_470_#_2_2924_CFAF_CFAG_CFAH_EXTA
Agaricus bisporus
fgenesh2_kg.4_#_470_#_2_2924_CFAF_CFAG_CFAH_EXTA
N
0.986
fgenesh2_pg.4_#_606
Pleurotus ostreatus
fgenesh2_pg.4_#_606
N
0.957
gwh2.22.107.1
Phanerochaete chrysosporium
gwh2.22.107.1
N
0.971