CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
CNBG_2125
(
Cryptococcus neoformans
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CNBG_2125
T28767_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CNBG_2125T0
RRM
137
206
LFVGDVSNDVNERTLDEAFGKYPSYCKCKVVRDRLSLKAKYAFIAFKDPEDFLKAWKEMDGKYVGNRPIR
Links
Other
RRM
family RBPs
Other
Cryptococcus neoformans
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
gw1.8.382.1
Tremella mesenterica
gw1.8.382.1
N
0.886
estExt_fgenesh1_pm.C_10202
Schizophyllum commune
estExt_fgenesh1_pm.C_10202
N
0.771
gwh2.22.107.1
Phanerochaete chrysosporium
gwh2.22.107.1
N
0.729
e_gw1.4.964.1
Heterobasidion annosum
e_gw1.4.964.1
N
0.729
fgenesh2_pg.4_#_606
Pleurotus ostreatus
fgenesh2_pg.4_#_606
N
0.714
estExt_Genewise1_worm.C_40476
Laccaria bicolor
estExt_Genewise1_worm.C_40476
N
0.714
fgenesh2_kg.4_#_470_#_2_2924_CFAF_CFAG_CFAH_EXTA
Agaricus bisporus
fgenesh2_kg.4_#_470_#_2_2924_CFAF_CFAG_CFAH_EXTA
N
0.714
estExt_fgenesh3_pg.C_140043
Postia placenta
estExt_fgenesh3_pg.C_140043
N
0.700
estExt_fgenesh2_kg.C_41440
Serpula lacrymans
estExt_fgenesh2_kg.C_41440
N
0.700