CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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fgeneshTA2_pg.C_scaffold_8000290
(
Trichoplax adhaerens
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
fgeneshTA2_pg.C_scaffold_8000290
T52539_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgeneshTA2_pg.C_scaffold_8000290
RRM
234
304
LFICKLNPVTSSEDLEIIFSRFGTILSCEVIRDQKTGDSLCYAFIEYENVDNCEKAYFKMDNVLIDDRRIH
Links
Other
RRM
family RBPs
Other
Trichoplax adhaerens
RBPs
173 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CG3808
Drosophila melanogaster
FBgn0036838
N
0.000
GF10790
Drosophila ananassae
FBgn0087830
N
0.000
GG13433
Drosophila erecta
FBgn0105705
N
0.000
GH16956
Drosophila grimshawi
FBgn0124427
N
0.000
GI11815
Drosophila mojavensis
FBgn0134574
N
0.000
GL21966
Drosophila persimilis
FBgn0159559
N
0.000
GM14902
Drosophila sechellia
FBgn0169823
N
0.000
GD12311
Drosophila simulans
FBgn0184044
N
0.000
GE22531
Drosophila yakuba
FBgn0239750
N
0.000
GE22791
Drosophila yakuba
FBgn0239996
N
0.000