CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
GM14902
(
Drosophila sechellia
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0169823
T43814_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0196379
RRM
85
128
KFDVTKIKAPTRKEFAFVCFRSQEDQQRGLEILNGYKWKGKVLK
Links
Other
RRM
family RBPs
Other
Drosophila sechellia
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GG13433
Drosophila erecta
FBgn0105705
N
0.977
GD12311
Drosophila simulans
FBgn0184044
N
0.977
CG3808
Drosophila melanogaster
FBgn0036838
N
0.977
GE22531
Drosophila yakuba
FBgn0239750
N
0.932
GE22791
Drosophila yakuba
FBgn0239996
N
0.911
GL21966
Drosophila persimilis
FBgn0159559
N
0.841
GH16956
Drosophila grimshawi
FBgn0124427
N
0.818
GJ13518
Drosophila virilis
FBgn0200742
N
0.818
GF10790
Drosophila ananassae
FBgn0087830
N
0.818
GI11815
Drosophila mojavensis
FBgn0134574
N
0.773