CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MDP0000795431
(
Malus x domestica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
MDP0000795431
T57725_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000795431
RRM
86
150
LYVSGLSFRTTEESLRNAFQNFGQLVEVNLVMDRIANRPRGFAFLRYETEEQSQKAIEGMHGKHE
Links
Other
RRM
family RBPs
Other
Malus x domestica
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Cucsa.112520
Cucumis sativus
Cucsa.112520
N
0.836
Glyma16g34330.1
Glycine max
Glyma16g34330.1
N
0.831
GSVIVG00029394001
Vitis vinifera
GSVIVG00029394001
N
0.803
mgf002289m
Mimulus guttatus
mgf002289m
N
0.746
PK27275.1
Cannabis sativa
PK27275.1
N
0.803
B9I4X6_POPTR
Populus trichocarpa
POPTR_0012s03520
N
0.803
ppa019414m
Prunus persica
ppa019414m
N
0.803