CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Glyma11g36830.1
(
Glycine max
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
Glyma11g36830.1
T61295_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Glyma11g36830.1
S1
97
173
SKLIYNGRVEGFNSGGLLVRFYSIMGFLPFPQLSPVHASKEPEKSIQEIAQGLIGSIMSVKVILADEDNKKLIFSEK
Glyma11g36830.1
S1
183
261
QVNVGDIFEVRVGYVEDYGAFVHLRFPDGLYRLTGLIHVSEVSWDLIQDVRDILKVGDEVRVKVVGIDWGKSRINLSIR
Links
Other
S1
family RBPs
Other
Glycine max
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
cassava24038.valid.m1
Manihot esculenta
cassava24038.valid.m1
N
0.728
Cucsa.094980
Cucumis sativus
Cucsa.094980
N
0.728
Glyma18g00740.1
Glycine max
Glyma18g00740.1
N
0.962
GSVIVG00031632001
Vitis vinifera
GSVIVG00031632001
N
0.755
Medtr3g104300
Medicago truncatula
Medtr3g104300
N
0.720
mgf012420m
Mimulus guttatus
mgf012420m
N
0.730
ppa009736m
Prunus persica
ppa009736m
N
0.705