CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GRMZM2G088114
(
Zea mays
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
GRMZM2G088114
T61366_0.6
MaizeSequence (2009-Oct-16)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G088114_P01
S1
445
505
YASTGEKVEVELINCSAKGFVVSLDSLIGFLPYRNLATKWKFLAFETWLRRKGGDPSLYKQ
GRMZM2G088114_P01
S1
543
586
KFEDLIRAYNQEKSKFLSSFIGQRLRVSVVLADRNSKRIFFSMK
GRMZM2G088114_P01
S1
603
675
RLNVGDIIQCTIKRFVYFGIFVEVEGVPALIQQWEVSWDDTLDPAVSYKIGQVVDAKVIQLDYNNIRIFLSLK
Links
Other
S1
family RBPs
Other
Zea mays
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BRADI3G01450
Brachypodium distachyon
BRADI3G01450
N
0.856
LOC_Os02g02390
Oryza sativa
LOC_Os02g02390
N
0.848
SB04G001123
Sorghum bicolor
Sb04g001123
N
0.972