CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os02g02390
(
Oryza sativa
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
LOC_Os02g02390
T60701_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os02g02390.1
S1
453
528
YASTGEKVEVELINCSSKGFVVSLDSLIGFLPYRNLATKWKFLAFETWLRQKGGDPSLFKQSVGIEESFEVNDRNI
LOC_Os02g02390.1
S1
553
594
EDLLRTYNTEKSKFLSSFIGQRLRVSVVLADRKSKKIFFSMK
LOC_Os02g02390.1
S1
611
683
KLNVGDIVECTIKRFVYFGIFVEVEGVPALIQQWEVSWDETLDPSVSYKIGQVVDAKVIQLDYNNNRIFLSLK
Links
Other
S1
family RBPs
Other
Oryza sativa
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BRADI3G01450
Brachypodium distachyon
BRADI3G01450
N
0.880
GRMZM2G088114
Zea mays
GRMZM2G088114
N
0.848
SB04G001123
Sorghum bicolor
Sb04g001123
N
0.848