CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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A6QPG4_BOVIN
(
Bos taurus
)
SAM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00536 (SAM_1)
IPR021129
ENSBTAG00000001468
T61765_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
SAMD4A
M061_0.6
Homo sapiens
GCKGGHM
RNAcompete
Ray et al.(2013)
RNCMPT00063
0.902
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSBTAP00000001925
SAM
257
317
EGSGMKDVPAWLKSLRLHKYAALFSQMTYEEMMALTECQLEAQNVTKGARHKIVISIQKLK
Links
Other
SAM
family RBPs
Other
Bos taurus
RBPs
82 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Genemark.11049_g
Serpula lacrymans
Genemark.11049_g
N
0.000
Genemark.11600_g
Serpula lacrymans
Genemark.11600_g
N
0.000
Genemark.12016_g
Serpula lacrymans
Genemark.12016_g
N
0.000
Genemark.12122_g
Serpula lacrymans
Genemark.12122_g
N
0.000
Genemark.12199_g
Serpula lacrymans
Genemark.12199_g
N
0.000
Genemark.1877_g
Serpula lacrymans
Genemark.1877_g
N
0.000
Genemark.2320_g
Serpula lacrymans
Genemark.2320_g
N
0.000
Genemark.2532_g
Serpula lacrymans
Genemark.2532_g
N
0.000
Genemark.3124_g
Serpula lacrymans
Genemark.3124_g
N
0.000
Genemark.4399_g
Serpula lacrymans
Genemark.4399_g
N
0.000
Genemark.446_g
Serpula lacrymans
Genemark.446_g
N
0.000
Genemark.469_g
Serpula lacrymans
Genemark.469_g
N
0.000
Genemark.4749_g
Serpula lacrymans
Genemark.4749_g
N
0.000
Genemark.4999_g
Serpula lacrymans
Genemark.4999_g
N
0.000
Genemark.618_g
Serpula lacrymans
Genemark.618_g
N
0.000
Genemark.7257_g
Serpula lacrymans
Genemark.7257_g
N
0.000
Genemark.8022_g
Serpula lacrymans
Genemark.8022_g
N
0.000
Genemark.8882_g
Serpula lacrymans
Genemark.8882_g
N
0.000
Genemark.940_g
Serpula lacrymans
Genemark.940_g
N
0.000
Genemark.9714_g
Serpula lacrymans
Genemark.9714_g
N
0.000
Genemark.983_g
Serpula lacrymans
Genemark.983_g
N
0.000