CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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A9PED2_POPTR
(
Populus trichocarpa
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
POPTR_0019s04990
T62254_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0019s04990.1
YTH
350
440
LLFSVNTSGQFVGLAEMVGPVDFNKTVEYWQQDKWTGCFPLKWHIIKDVPNGCLRHITLENNENKPVTNSRDTQEVIFEKGVQILKIFKDH
Links
Other
YTH
family RBPs
Other
Populus trichocarpa
RBPs
153 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SOCG_01961
Schizosaccharomyces octosporus
SOCG_01961
N
0.000