A9PED2_POPTR (Populus trichocarpa)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 POPTR_0019s04990 T62254_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0019s04990.1 YTH 350 440

Links

Other YTH family RBPs
Other Populus trichocarpa RBPs

153 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29950.m001140 Ricinus communis 29950.m001140 N 0.901
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.890
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.857
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.857
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.857
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.857
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.846
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.846
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.846
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.846
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.835
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.835
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.835
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.835
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.835
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.835
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.835
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.835
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.835
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.835
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.835
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.835
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.835
mgf013935m Mimulus guttatus mgf013935m N 0.835
SB02G003990 Sorghum bicolor Sb02g003990 N 0.835
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.835
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.835
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.835
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.835
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.835
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.835
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.824
SB01G005500 Sorghum bicolor Sb01g005500 N 0.824
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.824
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.824
MDP0000718677 Malus x domestica MDP0000718677 N 0.824
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.824
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.824
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.824
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.824
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.824
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.824
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.824
mgf009938m Mimulus guttatus mgf009938m N 0.813
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.813
mgf013853m Mimulus guttatus mgf013853m N 0.813
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.813
MDP0000129009 Malus x domestica MDP0000129009 N 0.813
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.813
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.813
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.813
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.813
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.813
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.813
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.813
SB01G008170 Sorghum bicolor Sb01g008170 N 0.813
MDP0000124048 Malus x domestica MDP0000124048 N 0.802
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.802
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.802
PK23716.1 Cannabis sativa PK23716.1 N 0.791
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.791
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.791
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.791
MDP0000488588 Malus x domestica MDP0000488588 N 0.780
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.780
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.769
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.769
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.769
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.758
MDP0000132385 Malus x domestica MDP0000132385 N 0.758
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.758
MDP0000306387 Malus x domestica MDP0000306387 N 0.758
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.758
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.758
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.758
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.758
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.758
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.758
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.747
29929.m004643 Ricinus communis 29929.m004643 N 0.747
SB07G024500 Sorghum bicolor Sb07g024500 N 0.747
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.747
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.747
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.747
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.747
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.747
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.747
SB07G006330 Sorghum bicolor Sb07g006330 N 0.747
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.747
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.747
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.747
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.747
ppa003664m Prunus persica ppa003664m N 0.736
ppa018635m Prunus persica ppa018635m N 0.736
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.736
MDP0000231231 Malus x domestica MDP0000231231 N 0.736
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.736
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.736
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.736
MDP0000286471 Malus x domestica MDP0000286471 N 0.736
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.736
B9GLB9_POPTR Populus trichocarpa POPTR_0001s03940 N 0.725
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.725
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.725
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.725
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.725
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.725
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.725
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.725
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.725
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.725
PK23104.1 Cannabis sativa PK23104.1 N 0.725
PK02315.1 Cannabis sativa PK02315.1 N 0.725
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.725
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.725
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.725
PK17832.1 Cannabis sativa PK17832.1 N 0.725
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.714
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.714
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.714
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.714
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.714
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.714
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.714
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.714
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.714
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.714
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.714
30169.m006347 Ricinus communis 30169.m006347 N 0.714
SB03G031190 Sorghum bicolor Sb03g031190 N 0.714
SB06G027960 Sorghum bicolor Sb06g027960 N 0.714
SB09G000580 Sorghum bicolor Sb09g000580 N 0.714
29890.m000285 Ricinus communis 29890.m000285 N 0.714
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.714
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.714
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.714
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.714
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.714
ppa002588m Prunus persica ppa002588m N 0.703
29955.m001158 Ricinus communis 29955.m001158 N 0.703
PK01736.1 Cannabis sativa PK01736.1 N 0.703
PK05579.1 Cannabis sativa PK05579.1 N 0.703
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.703
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.703
ppa002483m Prunus persica ppa002483m N 0.703
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.703
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.703
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.703
mgf019821m Mimulus guttatus mgf019821m N 0.703
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.703
MDP0000171737 Malus x domestica MDP0000171737 N 0.703
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.703
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.703