MDP0000214614 (Malus x domestica)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		MDP0000214614 T01099_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000214614 CCCH ZF 175 198
MDP0000214614 RRM 341 401

Links

Other CCCH ZF,RRM family RBPs
Other Malus x domestica RBPs

54 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RNF113B Macaca mulatta ENSMMUG00000022250 N 0.000
ENSSSCG00000012616 Sus scrofa ENSSSCG00000012616 N 0.000
RNF113A Tupaia belangeri ENSTBEG00000012687 N 0.000
RNF113A Taeniopygia guttata ENSTGUG00000001947 N 0.000
RNF113B Tetraodon nigroviridis ENSTNIG00000014938 N 0.000
RNF113B Takifugu rubripes ENSTRUG00000011142 N 0.000
RNF113A Vicugna pacos ENSVPAG00000004521 N 0.000
rnf113a Xenopus tropicalis ENSXETG00000002042 N 0.000
CG4973 Drosophila melanogaster FBgn0038772 N 0.000
GA18564-RA Drosophila pseudoobscura FBgn0064425 N 0.000
GK22373 Drosophila willistoni FBgn0067112 N 0.000
ENSSSCG00000012610 Sus scrofa ENSSSCG00000012610 N 0.000
ENSSARG00000010436 Sorex araneus ENSSARG00000010436 N 0.000
Rnf113a1 Rattus norvegicus ENSRNOG00000034040 N 0.000
Rnf113a1 Mus musculus ENSMUSG00000036537 N 0.000
ENSOANG00000002592 Ornithorhynchus anatinus ENSOANG00000002592 N 0.000
RNF113A Oryctolagus cuniculus ENSOCUG00000016207 N 0.000
RNF113A Otolemur garnettii ENSOGAG00000016171 N 0.000
Q67EQ7_ORYLA Oryzias latipes ENSORLG00000002442 N 0.000
RNF113A Procavia capensis ENSPCAG00000014633 N 0.000
ENSPPYG00000005460 Pongo pygmaeus ENSPPYG00000005460 N 0.000
ENSPPYG00000020676 Pongo pygmaeus ENSPPYG00000020676 N 0.000
RNF113B Pan troglodytes ENSPTRG00000005987 N 0.000
RNF113A Pan troglodytes ENSPTRG00000022231 N 0.000
GF17636 Drosophila ananassae FBgn0094654 N 0.000
GG23724 Drosophila erecta FBgn0115865 N 0.000
GH22886 Drosophila grimshawi FBgn0130343 N 0.000
estExt_GenewiseH_1.C_3140043 Nematostella vectensis estExt_GenewiseH_1.C_3140043 N 0.000
fgenesh1_pg.sca_2_chr3_3_0000871 Nectria haematococca fgenesh1_pg.sca_2_chr3_3_0000871 N 0.000
PASA_GEN_19100012 Daphnia pulex PASA_GEN_19100012 N 0.000
PredSwiss_CON4272.1 Pneumocystis carinii PredSwiss_CON4272.1 N 0.000
BGIBMGA000186 Bombyx mori BGIBMGA000186 N 0.000
Ame_R010811 Ailuropoda melanoleuca Ame_R010811 N 0.000
EDO07311.1 Babesia bovis EDO07311.1 N 0.000
XP_002169878.1 Hydra magnipapillata XP_002169878.1 N 0.000
AAH97882 Xenopus laevis AAH97882 N 0.000
AAI33788 Xenopus laevis AAI33788 N 0.000
estExt_Genewise1.C_sca_120492 Lottia gigantea estExt_Genewise1.C_sca_120492 N 0.000
estExt_Genewise1.C_11309 Trichoderma virens estExt_Genewise1.C_11309 N 0.000
estExt_fgenesh1_pm.C_chr_30248 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_30248 N 0.000
GI22714 Drosophila mojavensis FBgn0145441 N 0.000
GL12088 Drosophila persimilis FBgn0149696 N 0.000
GM17684 Drosophila sechellia FBgn0172592 N 0.000
GD19337 Drosophila simulans FBgn0190839 N 0.000
GE25648 Drosophila yakuba FBgn0242710 N 0.000
rnf-113 Caenorhabditis elegans K01G5.1 N 0.000
PHUM169980 Pediculus humanus PHUM169980 N 0.000
Ppa-tag-331 Pristionchus pacificus PPA25510 N 0.000
185736 Helobdella robusta 185736 N 0.000
estExt_fgenesh1_pg.C_5430007 Capitella teleta estExt_fgenesh1_pg.C_5430007 N 0.000
AAR97523 Xenopus laevis AAR97523 N 0.000
Bm1_06930 Brugia malayi Bm1_06930 N 0.000
DGIL_AUG5s12567g4t1 Acyrtosiphon pisum DGIL_AUG5s12567g4t1 N 0.000
nasonia_NCBI_hmm132664 Nasonia vitripennis nasonia_NCBI_hmm132664 N 0.000
AAEL001778 Aedes aegypti AAEL001778 N 0.000
AGAP007068 Anopheles gambiae AGAP007068 N 0.000
ACLA_012790 Aspergillus clavatus CADACLAG00001301 N 0.000
AFUA_5G07720 Aspergillus fumigatus CADAFUAG00006406 N 0.000
CBG18314 Caenorhabditis briggsae CBG18314 N 0.000
CBN12332 Caenorhabditis brenneri CBN12332 N 0.000
CJA02847 Caenorhabditis japonica CJA02847 N 0.000
CPIJ004936 Culex quinquefasciatus CPIJ004936 N 0.000
amel4_ncbi_hmm8953 Apis mellifera amel4_ncbi_hmm8953 N 0.000
WUBG_06682 Wuchereria bancrofti WUBG_06682 N 0.000
UREG_07314 Uncinocarpus reesii UREG_07314 N 0.000
CIMG_06140 Coccidioides immitis CIMG_06140 N 0.000
CpipJ_CPIJ004936 Culex pipiens CpipJ_CPIJ004936 N 0.000
CPSG_00950 Coccidioides posadasii CPSG_00950 N 0.000
FGSG_08901 Fusarium graminearum FGSG_08901 N 0.000
FOXG_03625 Fusarium oxysporum FOXG_03625 N 0.000
FVEG_11063 Fusarium verticillioides FVEG_11063 N 0.000
LOAG_01140 Loa loa LOAG_01140 N 0.000
MCYG_07006 Microsporum canis MCYG_07006 N 0.000
SPRG_10807 Saprolegnia parasitica SPRG_10807 N 0.000
SPRG_14175 Saprolegnia parasitica SPRG_14175 N 0.000
CRE04837 Caenorhabditis remanei CRE04837 N 0.000
ENSACAG00000012485 Anolis carolinensis ENSACAG00000012485 N 0.000
R113A_BOVIN Bos taurus ENSBTAG00000006034 N 0.000
RNF113B Homo sapiens ENSG00000139797 N 0.000
RNF113B Gasterosteus aculeatus ENSGACG00000009738 N 0.000
Q67ER3_CHICK Gallus gallus ENSGALG00000000538 N 0.000
RNF113A Gorilla gorilla ENSGGOG00000002324 N 0.000
RNF113B Gorilla gorilla ENSGGOG00000023052 N 0.000
RNF113A Loxodonta africana ENSLAFG00000013906 N 0.000
ENSMEUG00000001855 Macropus eugenii ENSMEUG00000001855 N 0.000
ENSMGAG00000001753 Meleagris gallopavo ENSMGAG00000001753 N 0.000
RNF113A Microcebus murinus ENSMICG00000001750 N 0.000
ENSMLUG00000010856 Myotis lucifugus ENSMLUG00000010856 N 0.000
RNF113A Homo sapiens ENSG00000125352 N 0.000
RNF113A Echinops telfairi ENSETEG00000018346 N 0.000
ENSECAG00000004638 Equus caballus ENSECAG00000004638 N 0.000
LOC518027 Bos taurus ENSBTAG00000008684 N 0.000
XM_538154.2 Canis familiaris ENSCAFG00000018430 N 0.000
RNF113A Choloepus hoffmanni ENSCHOG00000008711 N 0.000
NP_001027830.1 Ciona intestinalis ENSCING00000009197 N 0.000
RNF113B Callithrix jacchus ENSCJAG00000004501 N 0.000
LOC100388689 Callithrix jacchus ENSCJAG00000022327 N 0.000
ENSCSAVG00000006210 Ciona savignyi ENSCSAVG00000006210 N 0.000
rnf113a Danio rerio ENSDARG00000037930 N 0.000
RNF113A Dasypus novemcinctus ENSDNOG00000015321 N 0.000
LOC100058519 Equus caballus ENSECAG00000003934 N 0.000
RNF113A Macaca mulatta ENSMMUG00000020223 N 0.000