fgenesh1_pg.sca_2_chr3_3_0000871 (Nectria haematococca)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 fgenesh1_pg.sca_2_chr3_3_0000871 T05251_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.sca_2_chr3_3_0000871 CCCH ZF 171 197

Links

Other CCCH ZF family RBPs
Other Nectria haematococca RBPs

103 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
FOXG_03625 Fusarium oxysporum FOXG_03625 N 0.852
FGSG_08901 Fusarium graminearum FGSG_08901 N 0.815
e_gw1.32.54.1 Fragilariopsis cylindrus e_gw1.32.54.1 N 0.778
PHATRDRAFT_12516 Phaeodactylum tricornutum Phatr12516 N 0.778
e_gw1.12.147.1 Ostreococcus RCC809 e_gw1.12.147.1 N 0.778
fgenesh1_pg.C_Chr_12.0001000110 Ostreococcus tauri fgenesh1_pg.C_Chr_12.0001000110 N 0.778
AMAG_06522 Allomyces macrogynus AMAG_06522 N 0.778
gwEuk.12.222.1 Ostreococcus lucimarinus gwEuk.12.222.1 N 0.778
FVEG_11063 Fusarium verticillioides FVEG_11063 N 0.778
gw1.20.96.1 Phycomyces blakesleeanus gw1.20.96.1 N 0.778
THAPSDRAFT_25179 Thalassiosira pseudonana Thaps25179 N 0.778
AMAG_15438 Allomyces macrogynus AMAG_15438 N 0.778
estExt_fgeneshCV_pg.C_10417 Chlorella vulgaris estExt_fgeneshCV_pg.C_10417 N 0.741
estExt_fgenesh1_pm.C_170027 Phytophthora capsici estExt_fgenesh1_pm.C_170027 N 0.741
gm1.100391 Emiliania huxleyi gm1.100391 N 0.741
estExt_fgenesh1_pm.C_10087 Coccomyxa C 169 estExt_fgenesh1_pm.C_10087 N 0.741
fgenesh1_pg.C_scaffold_13000094 Phytophthora ramorum fgenesh1_pg.C_scaffold_13000094 N 0.741
ENSSARG00000010436 Sorex araneus ENSSARG00000010436 N 0.704
ENSSSCG00000012610 Sus scrofa ENSSSCG00000012610 N 0.704
RNF113A Procavia capensis ENSPCAG00000014633 N 0.704
RNF113A Pan troglodytes ENSPTRG00000022231 N 0.704
ENSPPYG00000020676 Pongo pygmaeus ENSPPYG00000020676 N 0.704
RNF113B Pan troglodytes ENSPTRG00000005987 N 0.704
ENSPPYG00000005460 Pongo pygmaeus ENSPPYG00000005460 N 0.704
Q67EQ7_ORYLA Oryzias latipes ENSORLG00000002442 N 0.704
Rnf113a1 Rattus norvegicus ENSRNOG00000034040 N 0.704
ENSOANG00000002592 Ornithorhynchus anatinus ENSOANG00000002592 N 0.704
ENSMLUG00000010856 Myotis lucifugus ENSMLUG00000010856 N 0.704
RNF113A Microcebus murinus ENSMICG00000001750 N 0.704
ENSMGAG00000001753 Meleagris gallopavo ENSMGAG00000001753 N 0.704
ENSMEUG00000001855 Macropus eugenii ENSMEUG00000001855 N 0.704
RNF113A Macaca mulatta ENSMMUG00000020223 N 0.704
RNF113B Macaca mulatta ENSMMUG00000022250 N 0.704
RNF113A Oryctolagus cuniculus ENSOCUG00000016207 N 0.704
ENSSSCG00000012616 Sus scrofa ENSSSCG00000012616 N 0.704
Rnf113a1 Mus musculus ENSMUSG00000036537 N 0.704
RNF113A Otolemur garnettii ENSOGAG00000016171 N 0.704
XM_002892025.1 Arabidopsis lyrata scaffold_100114.1 N 0.704
e_gw1.2.1336.1 Trichoplax adhaerens e_gw1.2.1336.1 N 0.704
Cucsa.060530 Cucumis sativus Cucsa.060530 N 0.704
PY01907 Plasmodium yoelii PY01907 N 0.704
estExt_fgenesh1_pg.C_5430007 Capitella teleta estExt_fgenesh1_pg.C_5430007 N 0.704
estExt_Genewise1.C_11309 Trichoderma virens estExt_Genewise1.C_11309 N 0.704
estExt_GenewiseH_1.C_3140043 Nematostella vectensis estExt_GenewiseH_1.C_3140043 N 0.704
estExt_Genewise1.C_sca_120492 Lottia gigantea estExt_Genewise1.C_sca_120492 N 0.704
estExt_Genewise1.C_120284 Chlorella NC64A estExt_Genewise1.C_120284 N 0.704
PF14_0416 Plasmodium falciparum PF14_0416 N 0.704
PCHAS_131090 Plasmodium chabaudi PCHAS_131090 N 0.704
RNF113B Takifugu rubripes ENSTRUG00000011142 N 0.704
RNF113B Tetraodon nigroviridis ENSTNIG00000014938 N 0.704
RNF113A Taeniopygia guttata ENSTGUG00000001947 N 0.704
RNF113A Vicugna pacos ENSVPAG00000004521 N 0.704
rnf113a Xenopus tropicalis ENSXETG00000002042 N 0.704
PBANKA_130770 Plasmodium berghei PBANKA_130770 N 0.704
RNF113A Loxodonta africana ENSLAFG00000013906 N 0.704
PHUM169980 Pediculus humanus PHUM169980 N 0.704
RNF113A Tupaia belangeri ENSTBEG00000012687 N 0.704
RNF113A Echinops telfairi ENSETEG00000018346 N 0.704
LOAG_01140 Loa loa LOAG_01140 N 0.704
GLRG_04651 Colletotrichum graminicola GLRG_04651 N 0.704
Bm1_06930 Brugia malayi Bm1_06930 N 0.704
BC1G_08876 Botrytis cinerea BC1G_08876 N 0.704
MCYG_07006 Microsporum canis MCYG_07006 N 0.704
MGG_02960 Magnaporthe oryzae MGG_02960 N 0.704
WUBG_06682 Wuchereria bancrofti WUBG_06682 N 0.704
SS1G_11427 Sclerotinia sclerotiorum SS1G_11427 N 0.704
SPPG_00604 Spizellomyces punctatus SPPG_00604 N 0.704
PITG_04905 Phytophthora infestans PITG_04905 N 0.704
AAR97523 Xenopus laevis AAR97523 N 0.704
AAI33788 Xenopus laevis AAI33788 N 0.704
s_444298 Phytophthora sojae s_444298 N 0.704
gw1.9.306.1 Micromonas pusilla gw1.9.306.1 N 0.704
gw1.2.379.1 Trichoderma atroviride gw1.2.379.1 N 0.704
fgenesh2_pg.C_scaffold_6000249 Selaginella moellendorfii fgenesh2_pg.C_scaffold_6000249 N 0.704
PredSwiss_CON4272.1 Pneumocystis carinii PredSwiss_CON4272.1 N 0.704
BGIBMGA000186 Bombyx mori BGIBMGA000186 N 0.704
AAH97882 Xenopus laevis AAH97882 N 0.704
XP_002169878.1 Hydra magnipapillata XP_002169878.1 N 0.704
Ame_R010811 Ailuropoda melanoleuca Ame_R010811 N 0.704
amel4_ncbi_hmm8953 Apis mellifera amel4_ncbi_hmm8953 N 0.704
DGIL_AUG5s12567g4t1 Acyrtosiphon pisum DGIL_AUG5s12567g4t1 N 0.704
ENSECAG00000004638 Equus caballus ENSECAG00000004638 N 0.704
LOC100058519 Equus caballus ENSECAG00000003934 N 0.704
RNF113A Dasypus novemcinctus ENSDNOG00000015321 N 0.704
rnf113a Danio rerio ENSDARG00000037930 N 0.704
fgenesh1_pg.sca_6_chr9_2_0000705 Nectria haematococca fgenesh1_pg.sca_6_chr9_2_0000705 N 0.704
RNF113A Homo sapiens ENSG00000125352 N 0.704
RNF113A Gorilla gorilla ENSGGOG00000002324 N 0.704
Q67ER3_CHICK Gallus gallus ENSGALG00000000538 N 0.704
RNF113B Gasterosteus aculeatus ENSGACG00000009738 N 0.704
RNF113B Homo sapiens ENSG00000139797 N 0.704
ENSCSAVG00000006210 Ciona savignyi ENSCSAVG00000006210 N 0.704
LOC100388689 Callithrix jacchus ENSCJAG00000022327 N 0.704
ENSACAG00000012485 Anolis carolinensis ENSACAG00000012485 N 0.704
AT5G06420 Arabidopsis thaliana AT5G06420-TAIR-G N 0.704
AT1G01350 Arabidopsis thaliana AT1G01350-TAIR-G N 0.704
nasonia_NCBI_hmm132664 Nasonia vitripennis nasonia_NCBI_hmm132664 N 0.704
R113A_BOVIN Bos taurus ENSBTAG00000006034 N 0.704
LOC518027 Bos taurus ENSBTAG00000008684 N 0.704
RNF113B Callithrix jacchus ENSCJAG00000004501 N 0.704
NP_001027830.1 Ciona intestinalis ENSCING00000009197 N 0.704
XM_538154.2 Canis familiaris ENSCAFG00000018430 N 0.704
RNF113B Gorilla gorilla ENSGGOG00000023052 N 0.704