CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ppa002413m
(
Prunus persica
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
ppa002413m
T01125_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ppa002413m
CCCH ZF
216
237
KPCLYYSRGFCKNGSSCRFLHS
ppa002413m
RRM
355
415
DSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYSETVKIILAKGNPHFVCDSRVL
Links
Other
CCCH ZF,RRM
family RBPs
Other
Prunus persica
RBPs
77 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
DDB_G0284245
Dictyostelium discoideum
DDB_G0284245
N
0.000