CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CIMG_04751
(
Coccidioides immitis
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
CIMG_04751
T01294_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CIMG_04751T0
CCCH ZF
41
61
SDVPVCKAYREGHCPLGPMCP
CIMG_04751T0
CCCH ZF
87
109
LVCKHYLKGLCKKGIKCEYLHEY
CIMG_04751T0
CCCH ZF
112
138
RRMPECQSFARSGYCANGDDCLYQHVS
CIMG_04751T0
CCCH ZF
142
165
KLPPCEHYDKGFCPLGPLCAKKHV
CIMG_04751T0
CCCH ZF
166
185
RRKICPFYLAGFCPEGRACT
Links
Other
CCCH ZF
family RBPs
Other
Coccidioides immitis
RBPs
23 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PGTG_16909
Puccinia graminis
PGTG_16909
N
0.000