CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Gm7353
(
Mus musculus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSMUSG00000055452
T03011_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000066020
CCCH ZF
663
689
KKREYCMYYNRFGRCNRGECCPYIHDP
ENSMUSP00000066020
CCCH ZF
719
743
EKMPVCSYFLKGICSNSNCPYSHVY
ENSMUSP00000066020
CCCH ZF
746
771
RKAEVCSDFLKGYCPLGAKCKKKHTL
ENSMUSP00000066020
CCCH ZF
768
792
KHTLLCPDFARRGICPRGSQCQLLH
Links
Other
CCCH ZF
family RBPs
Other
Mus musculus
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ZC3H3
Bos taurus
ENSBTAG00000021472
N
0.883
Zc3h3
Rattus norvegicus
ENSRNOG00000007684
N
0.971
ZC3H3
Pteropus vampyrus
ENSPVAG00000005979
N
0.932
ZC3H3
Pan troglodytes
ENSPTRG00000020655
N
0.933
ENSPPYG00000018935
Pongo pygmaeus
ENSPPYG00000018935
N
0.933
Zc3h3
Mus musculus
ENSMUSG00000075600
N
1.000
ZC3H3
Macaca mulatta
ENSMMUG00000019255
N
0.933
ZC3H3
Homo sapiens
ENSG00000014164
N
0.933
LOC100065889
Equus caballus
ENSECAG00000012556
N
0.894
ZC3H3
Callithrix jacchus
ENSCJAG00000021439
N
0.913
ZC3H3
Spermophilus tridecemlineatus
ENSSTOG00000004358
N
0.932