CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSOCUG00000021607
(
Oryctolagus cuniculus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSOCUG00000021607
T03068_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOCUP00000018857
CCCH ZF
53
78
TKQITCRYFMRGVCEEGDNCRYLHHL
ENSOCUP00000018857
CCCH ZF
84
100
GVVCKYFQRGYCICGDR
Links
Other
CCCH ZF
family RBPs
Other
Oryctolagus cuniculus
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
KHSRP
Homo sapiens
ENSG00000088247
D
0.000
ENSPPYG00000001219
Pongo pygmaeus
ENSPPYG00000001219
I
0.000
FUBP1
Echinops telfairi
ENSETEG00000000948
N
0.000
FUBP1
Sorex araneus
ENSSARG00000011730
N
0.000
FUBP3
Pan troglodytes
ENSPTRG00000021474
N
0.000
KHSRP
Oryctolagus cuniculus
ENSOCUG00000026747
N
0.000
FUBP3
Oryctolagus cuniculus
ENSOCUG00000006183
N
0.000
FUBP3
Macaca mulatta
ENSMMUG00000008249
N
0.000
FUBP3
Homo sapiens
ENSG00000107164
N
0.000
estExt_fgenesh2_pg.C_30010
Branchiostoma floridae
estExt_fgenesh2_pg.C_30010
N
0.000