CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins

RBP Information

ZFP36L1 *(Sus scrofa)* CCCH ZF
Pfam ID	Interpro ID	Gene ID	CISBP-RNA ID	Sequence source
PF00642 (zf-CCCH)	IPR000571	ENSSSCG00000002302	T03365_0.6	Ensembl (2011-Oct-26)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Sequence Logo	IUPAC	Type/Study/Study ID	RBD Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID	Species	Sequence Logo	IUPAC	Type/Study/Study ID	RBD Identity
ZFP36 M263_0.6	Homo sapiens	Sequence logo not available	AAUAA	RIP-chip Cook et al.(2011) 193_18367721	0.722
ZFP36 M350_0.6	Homo sapiens		UUAUUUAWW	SELEX Cook et al.(2011) 951_12324455	0.722
ZFP36 M269_0.6	Homo sapiens		UUAUUUAWW	SELEX Cook et al.(2011) 221_12324455	0.722
ZFP36 M268_0.6	Homo sapiens	Sequence logo not available	AUUUA	RIP-chip Cook et al.(2011) 194_18256032.1	0.722
ZFP36 M267_0.6	Homo sapiens	Sequence logo not available	UUAUUUAUU	RIP-chip Cook et al.(2011) 194_18256032	0.722
ZFP36 M266_0.6	Homo sapiens	Sequence logo not available	UUGUGS	RIP-chip Cook et al.(2011) 193_18367721.3	0.722
ZFP36 M265_0.6	Homo sapiens	Sequence logo not available	CUUGU	RIP-chip Cook et al.(2011) 193_18367721.2	0.722
ZFP36 M264_0.6	Homo sapiens	Sequence logo not available	HCYUBY	RIP-chip Cook et al.(2011) 193_18367721.1	0.722
For this family, RBPs with RBD identity > 0.7* will likely have a similar motif*

RNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSSSCP00000002499	CCCH ZF	93	119	YKTELCRPFEENGACKYGDKCQFAHGI
ENSSSCP00000002499	CCCH ZF	131	157	YKTELCRTFHTIGFCPYGPRCHFIHNA

Links
Other CCCH ZF family RBPs
Other *Sus scrofa* RBPs

161 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name	Species	Gene ID	Motif Evidence	RBD Identity	Action
LbrM30_V2.2150	Leishmania braziliensis	LbrM30_V2.2150	N	0.000
LinJ30_V3.2210	Leishmania infantum	LinJ30_V3.2210	N	0.000
LmjF30.2200	Leishmania major	LmjF30.2200	N	0.000