MBNL1 (Takifugu rubripes)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSTRUG00000001892 T03516_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MBNL1
M320_0.6 		Homo sapiens YYYGCUKY; YGCY SELEX
Cook et al.(2011)
669_20071745 		0.957
MBNL1
M037_0.6 		Homo sapiens GCUUGC RNAcompete
Ray et al.(2013)
RNCMPT00038 		0.957
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000004352 CCCH ZF 19 43
ENSTRUP00000004352 CCCH ZF 60 75
ENSTRUP00000004352 CCCH ZF 186 212
ENSTRUP00000004352 CCCH ZF 223 246
ENSTRUP00000004353 CCCH ZF 16 40
ENSTRUP00000004353 CCCH ZF 57 72
ENSTRUP00000004353 CCCH ZF 183 209
ENSTRUP00000004353 CCCH ZF 220 243
ENSTRUP00000004354 CCCH ZF 16 40
ENSTRUP00000004354 CCCH ZF 57 72
ENSTRUP00000004354 CCCH ZF 183 209
ENSTRUP00000004354 CCCH ZF 220 243
ENSTRUP00000004355 CCCH ZF 16 40
ENSTRUP00000004355 CCCH ZF 57 72
ENSTRUP00000004355 CCCH ZF 113 138
ENSTRUP00000004355 CCCH ZF 149 172
ENSTRUP00000004356 CCCH ZF 16 40
ENSTRUP00000004356 CCCH ZF 57 72
ENSTRUP00000004356 CCCH ZF 183 209
ENSTRUP00000004356 CCCH ZF 220 243
ENSTRUP00000004357 CCCH ZF 16 40
ENSTRUP00000004357 CCCH ZF 57 72
ENSTRUP00000004357 CCCH ZF 183 209
ENSTRUP00000004357 CCCH ZF 220 243
ENSTRUP00000004358 CCCH ZF 24 48
ENSTRUP00000004358 CCCH ZF 65 80
ENSTRUP00000004358 CCCH ZF 191 217
ENSTRUP00000004358 CCCH ZF 228 251

Links

Other CCCH ZF family RBPs
Other Takifugu rubripes RBPs

112 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
amel4_ncbi_hmm44335 Apis mellifera amel4_ncbi_hmm44335 N 0.000
PHUM473040 Pediculus humanus PHUM473040 N 0.000
BGIBMGA006328 Bombyx mori BGIBMGA006328 N 0.000