CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GA21225-RA
(
Drosophila pseudoobscura
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
FBgn0081213
T03689_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0276162
CCCH ZF
95
120
PKSVVCAFFKQGLCTKGDKCKFSHDL
FBpp0276162
CCCH ZF
182
200
SKYGWFWECPNGEKCIYRH
Links
Other
CCCH ZF
family RBPs
Other
Drosophila pseudoobscura
RBPs
26 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgeneshEH_pg.287__4
Emiliania huxleyi
fgeneshEH_pg.287__4
N
0.000
gm1.2700178
Emiliania huxleyi
gm1.2700178
N
0.000
gm1.7800181
Emiliania huxleyi
gm1.7800181
N
0.000