CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Medtr7g132670
(
Medicago truncatula
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
Medtr7g132670
T05794_0.6
PlantGDB (2010-Oct-15)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Medtr7g132670.1
CCCH ZF
251
277
YQPDICKDYKETGYCGYGDSCKFMHDR
Links
Other
CCCH ZF
family RBPs
Other
Medicago truncatula
RBPs
243 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LinJ30_V3.3050
Leishmania infantum
LinJ30_V3.3050
N
0.000
LmjF30.3020
Leishmania major
LmjF30.3020
N
0.000
LmxM29.3020
Leishmania mexicana
LmxM29.3020
N
0.000
Tbg972.6.4160
Trypanosoma brucei
Tbg972.6.4160
N
0.000
Tc00.1047053506943.120
Trypanosoma cruzi
Tc00.1047053506943.120
N
0.000
TvY486_0603770
Trypanosoma vivax
TvY486_0603770
N
0.000