CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BRADI1G12460
(
Brachypodium distachyon
)
CCHC ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1)
IPR001878
IPR000504
BRADI1G12460
T07175_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BRADI1G12460.1
RRM
9
79
IFVGGLSFHTDERKLEEAFRRFGKVVDAQIMLERHTNRHRGFGFVTFSDPRAVESAISEMHTKELDGRTIS
BRADI1G12460.1
CCHC ZF
118
135
GNCYQCGRAGHWARDCPN
Links
Other
CCHC ZF,RRM
family RBPs
Other
Brachypodium distachyon
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
nasonia_NCBI_hmm165134
Nasonia vitripennis
nasonia_NCBI_hmm165134
N
0.000
nasonia_NCBI_hmm366634
Nasonia vitripennis
nasonia_NCBI_hmm366634
N
0.000
nasonia_NCBI_hmm48144
Nasonia vitripennis
nasonia_NCBI_hmm48144
N
0.000