CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
nasonia_NCBI_hmm165134
(
Nasonia vitripennis
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
nasonia_NCBI_hmm165134
T09019_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
nasonia_NCBI_hmm165134
CCHC ZF
353
370
TRCYRCLGYGHVKARCKG
nasonia_NCBI_hmm165134
CCHC ZF
375
392
ANCWKCGASGHKAALCTV
Links
Other
CCHC ZF
family RBPs
Other
Nasonia vitripennis
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
nasonia_NCBI_hmm48144
Nasonia vitripennis
nasonia_NCBI_hmm48144
N
0.944
nasonia_NCBI_hmm366634
Nasonia vitripennis
nasonia_NCBI_hmm366634
N
0.917
nasonia_NCBI_hmm438044
Nasonia vitripennis
nasonia_NCBI_hmm438044
N
0.889
nasonia_NCBI_hmm58704
Nasonia vitripennis
nasonia_NCBI_hmm58704
N
0.778
nasonia_NCBI_hmm7164
Nasonia vitripennis
nasonia_NCBI_hmm7164
N
0.750
nasonia_NCBI_hmm3204
Nasonia vitripennis
nasonia_NCBI_hmm3204
N
0.750
nasonia_NCBI_hmm269284
Nasonia vitripennis
nasonia_NCBI_hmm269284
N
0.750