CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ppa012111m
(
Prunus persica
)
CCHC ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1)
IPR001878
IPR000504
ppa012111m
T07702_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ppa012111m
RRM
4
63
VYVGNLDPRVNERDLEDEFRMFGVLRGVWVARRPPGYAFIEFDDRRDALDAIQAVDGKNG
ppa012111m
CCHC ZF
92
109
LRCYECGEPGHFARECRL
Links
Other
CCHC ZF,RRM
family RBPs
Other
Prunus persica
RBPs
48 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ARB_06676
Arthroderma benhamiae
ARB_06676
N
0.000
CIMG_06805
Coccidioides immitis
CIMG_06805
N
0.000
MCYG_01649
Microsporum canis
MCYG_01649
N
0.000
TEQG_02351
Trichophyton equinum
TEQG_02351
N
0.000
TERG_07835
Trichophyton rubrum
TERG_07835
N
0.000
TRV_04019
Trichophyton verrucosum
TRV_04019
N
0.000
UREG_03666
Uncinocarpus reesii
UREG_03666
N
0.000