CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AT4G09425
(
Arabidopsis thaliana
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
AT4G09425-TAIR-G
T09400_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT4G09425.1-P
CCHC ZF
235
252
KVCWICGKEGHFKRQCYK
Links
Other
CCHC ZF
family RBPs
Other
Arabidopsis thaliana
RBPs
17 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CBG17615
Caenorhabditis briggsae
CBG17615
N
0.000
CBN15812
Caenorhabditis brenneri
CBN15812
N
0.000
CRE11038
Caenorhabditis remanei
CRE11038
N
0.000
CRE23244
Caenorhabditis remanei
CRE23244
N
0.000
T11G6.8
Caenorhabditis elegans
T11G6.8
N
0.000