AT5G52380 (Arabidopsis thaliana)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 AT5G52380-TAIR-G T09430_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT5G52380.1-P CCHC ZF 74 91
AT5G52380.1-P CCHC ZF 99 116
AT5G52380.1-P CCHC ZF 125 141
AT5G52380.1-P CCHC ZF 152 169
AT5G52380.1-P CCHC ZF 179 196

Links

Other CCHC ZF family RBPs
Other Arabidopsis thaliana RBPs

13 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BRADI5G17970 Brachypodium distachyon BRADI5G17970 N 0.744
MDP0000158436 Malus x domestica MDP0000158436 N 0.730
chr5.CM0148.200.nc Lotus japonicus chr5.CM0148.200.nc N 0.722
GRMZM2G071253 Zea mays GRMZM2G071253 N 0.744
Glyma20g29830.1 Glycine max Glyma20g29830.1 N 0.711
Glyma10g37970.1 Glycine max Glyma10g37970.1 N 0.708
cassava21292.m1 Manihot esculenta cassava21292.m1 N 0.722
30147.m013737 Ricinus communis 30147.m013737 N 0.722
SB06G024880 Sorghum bicolor Sb06g024880 N 0.744
LOC_Os04g46920 Oryza sativa LOC_Os04g46920 N 0.733
GSVIVG00028962001 Vitis vinifera GSVIVG00028962001 N 0.756
XM_002865864.1 Arabidopsis lyrata fgenesh2_kg.8__1122__AT5G52380.1 N 0.989
MDP0000322696 Malus x domestica MDP0000322696 N 0.753