GRMZM2G071253 (Zea mays)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 GRMZM2G071253 T15026_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G071253_P01 CCHC ZF 69 86
GRMZM2G071253_P01 CCHC ZF 94 111
GRMZM2G071253_P01 CCHC ZF 119 136
GRMZM2G071253_P01 CCHC ZF 146 163
GRMZM2G071253_P01 CCHC ZF 173 190

Links

Other CCHC ZF family RBPs
Other Zea mays RBPs

14 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB06G024880 Sorghum bicolor Sb06g024880 N 0.978
BRADI5G17970 Brachypodium distachyon BRADI5G17970 N 0.933
LOC_Os04g46920 Oryza sativa LOC_Os04g46920 N 0.911
GSVIVG00028962001 Vitis vinifera GSVIVG00028962001 N 0.800
MDP0000322696 Malus x domestica MDP0000322696 N 0.767
30147.m013737 Ricinus communis 30147.m013737 N 0.756
AT5G52380 Arabidopsis thaliana AT5G52380-TAIR-G N 0.744
MDP0000158436 Malus x domestica MDP0000158436 N 0.744
PK24306.1 Cannabis sativa PK24306.1 N 0.744
cassava21292.m1 Manihot esculenta cassava21292.m1 N 0.744
XM_002865864.1 Arabidopsis lyrata fgenesh2_kg.8__1122__AT5G52380.1 N 0.733
Glyma20g29830.1 Glycine max Glyma20g29830.1 N 0.722
Glyma10g37970.1 Glycine max Glyma10g37970.1 N 0.711
chr5.CM0148.200.nc Lotus japonicus chr5.CM0148.200.nc N 0.711