CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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DDX41
(
Macropus eugenii
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
ENSMEUG00000014375
T10255_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMEUP00000013130
CCHC ZF
579
596
RGCTFCGGLGHRITDCPK
Links
Other
CCHC ZF
family RBPs
Other
Macropus eugenii
RBPs
79 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL010535
Aedes aegypti
AAEL010535
N
0.000
XP_001191490.1
Strongylocentrotus purpuratus
XP_001191490.1
N
0.000
Smp_099900
Schistosoma mansoni
Smp_099900
N
0.000
Sjc_0049010
Schistosoma japonicum
Sjc_0049010
N
0.000
estExt_Genewise1.C_350015
Capitella teleta
estExt_Genewise1.C_350015
N
0.000
e_gw1.132.32.1
Postia placenta
e_gw1.132.32.1
N
0.000
GE22859
Drosophila yakuba
FBgn0240063
N
0.000
GJ20510
Drosophila virilis
FBgn0207650
N
0.000
GM20672
Drosophila sechellia
FBgn0175554
N
0.000
GL11672
Drosophila persimilis
FBgn0149281
N
0.000
GI20775
Drosophila mojavensis
FBgn0143510
N
0.000
GH21804
Drosophila grimshawi
FBgn0129265
N
0.000
GG10627
Drosophila erecta
FBgn0102935
N
0.000
GF12572
Drosophila ananassae
FBgn0089609
N
0.000
GA21225-RA
Drosophila pseudoobscura
FBgn0081213
N
0.000
CG8635
Drosophila melanogaster
FBgn0033317
N
0.000
AGAP008634
Anopheles gambiae
AGAP008634
N
0.000
XP_785608.2
Strongylocentrotus purpuratus
XP_785608.2
N
0.000