CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os02g25170
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os02g25170
T10915_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os02g25170.1
CCHC ZF
252
269
RACFNCGEYGHFIADCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
43 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Smp_067420
Schistosoma mansoni
Smp_067420
D
0.000
sf3b4
Danio rerio
ENSDARG00000018574
D
0.000
GG19577
Drosophila erecta
FBgn0111779
I
0.000
GH17589
Drosophila grimshawi
FBgn0125059
I
0.000
GI16317
Drosophila mojavensis
FBgn0139065
I
0.000
GL21313
Drosophila persimilis
FBgn0158906
I
0.000
GM12470
Drosophila sechellia
FBgn0167407
I
0.000
GJ15655
Drosophila virilis
FBgn0202845
I
0.000
GK19717
Drosophila willistoni
FBgn0221715
I
0.000
GF20385
Drosophila ananassae
FBgn0097392
I
0.000
GA17684-RA
Drosophila pseudoobscura
FBgn0077694
I
0.000
Spx
Drosophila melanogaster
FBgn0015818
I
0.000
ENSSTOG00000006570
Spermophilus tridecemlineatus
ENSSTOG00000006570
I
0.000
SF3B4
Taeniopygia guttata
ENSTGUG00000004470
I
0.000
SF3B4
Tetraodon nigroviridis
ENSTNIG00000009156
I
0.000
SF3B4
Takifugu rubripes
ENSTRUG00000004516
I
0.000
SF3B4
Tarsius syrichta
ENSTSYG00000009295
I
0.000
ENSTTRG00000005217
Tursiops truncatus
ENSTTRG00000005217
I
0.000
ENSVPAG00000008152
Vicugna pacos
ENSVPAG00000008152
I
0.000
sf3b4
Xenopus tropicalis
ENSXETG00000011038
I
0.000
GE16738
Drosophila yakuba
FBgn0234234
I
0.000
GSVIVG00018991001
Vitis vinifera
GSVIVG00018991001
I
0.000
ISCW010601
Ixodes scapularis
ISCW010601
I
0.000
XP_784135.2
Strongylocentrotus purpuratus
XP_784135.2
I
0.000
XP_002157695.1
Hydra magnipapillata
XP_002157695.1
I
0.000
XP_001185838.1
Strongylocentrotus purpuratus
XP_001185838.1
I
0.000
AAH77458
Xenopus laevis
AAH77458
I
0.000
MDP0000320945
Malus x domestica
MDP0000320945
I
0.000
MDP0000131129
Malus x domestica
MDP0000131129
I
0.000
Ame_R019118
Ailuropoda melanoleuca
Ame_R019118
I
0.000
gw1.3.260.1
Chlorella NC64A
gw1.3.260.1
I
0.000
fgenesh2_pg.scaffold_36000101
Branchiostoma floridae
fgenesh2_pg.scaffold_36000101
I
0.000
estExt_Genewise1.C_sca_2060028
Lottia gigantea
estExt_Genewise1.C_sca_2060028
I
0.000
estExt_Genewise1.C_230076
Capitella teleta
estExt_Genewise1.C_230076
I
0.000
estExt_fgenesh2_pm.C_9540001
Branchiostoma floridae
estExt_fgenesh2_pm.C_9540001
I
0.000
e_gw1.1.857.1
Daphnia pulex
e_gw1.1.857.1
I
0.000
Cucsa.251850
Cucumis sativus
Cucsa.251850
I
0.000
cassava31033.valid.m1
Manihot esculenta
cassava31033.valid.m1
I
0.000
30183.m001303
Ricinus communis
30183.m001303
I
0.000
PHUM263440
Pediculus humanus
PHUM263440
I
0.000
AAH45264
Xenopus laevis
AAH45264
I
0.000
ENSSSCG00000006665
Sus scrofa
ENSSSCG00000006665
I
0.000
Sf3b4
Rattus norvegicus
ENSRNOG00000021181
I
0.000
ENSACAG00000010019
Anolis carolinensis
ENSACAG00000010019
I
0.000
Q3MHE6_BOVIN
Bos taurus
ENSBTAG00000012495
I
0.000
ENSBTAG00000012793
Bos taurus
ENSBTAG00000012793
I
0.000
ENSCAFG00000005753
Canis familiaris
ENSCAFG00000005753
I
0.000
ENSCAFG00000011617
Canis familiaris
ENSCAFG00000011617
I
0.000
A6MKC5_CALJA
Callithrix jacchus
ENSCJAG00000000793
I
0.000
ENSCPOG00000008267
Cavia porcellus
ENSCPOG00000008267
I
0.000
LOC100054350
Equus caballus
ENSECAG00000024737
I
0.000
CPIJ014149
Culex quinquefasciatus
CPIJ014149
I
0.000
CJA19238
Caenorhabditis japonica
CJA19238
I
0.000
CpipJ_CPIJ014149
Culex pipiens
CpipJ_CPIJ014149
I
0.000
SPPG_04182
Spizellomyces punctatus
SPPG_04182
I
0.000
PK08238.1
Cannabis sativa
PK08238.1
I
0.000
amel4_ncbi_hmm1889
Apis mellifera
amel4_ncbi_hmm1889
I
0.000
DGIL_AUG5s13542g6t1
Acyrtosiphon pisum
DGIL_AUG5s13542g6t1
I
0.000
nasonia_NCBI_hmm192414
Nasonia vitripennis
nasonia_NCBI_hmm192414
I
0.000
AAEL013795
Aedes aegypti
AAEL013795
I
0.000
AGAP001538
Anopheles gambiae
AGAP001538
I
0.000
ENSFCAG00000010106
Felis catus
ENSFCAG00000010106
I
0.000
SF3B4
Homo sapiens
ENSG00000143368
I
0.000
Sf3b4
Mus musculus
ENSMUSG00000068856
I
0.000
ENSOCUG00000004614
Oryctolagus cuniculus
ENSOCUG00000004614
I
0.000
SF3B4
Otolemur garnettii
ENSOGAG00000006265
I
0.000
ENSOPRG00000010808
Ochotona princeps
ENSOPRG00000010808
I
0.000
SF3B4
Oryzias latipes
ENSORLG00000003062
I
0.000
ENSPCAG00000000392
Procavia capensis
ENSPCAG00000000392
I
0.000
SF3B4
Pan troglodytes
ENSPTRG00000001243
I
0.000
ENSPVAG00000014171
Pteropus vampyrus
ENSPVAG00000014171
I
0.000
ENSMODG00000018767
Monodelphis domestica
ENSMODG00000018767
I
0.000
SF3B4
Macaca mulatta
ENSMMUG00000007256
I
0.000
SF3B4
Gasterosteus aculeatus
ENSGACG00000003819
I
0.000
SF3B4
Gallus gallus
ENSGALG00000013352
I
0.000
SF3B4
Gorilla gorilla
ENSGGOG00000004761
I
0.000
ENSLAFG00000008531
Loxodonta africana
ENSLAFG00000008531
I
0.000
ENSMEUG00000003272
Macropus eugenii
ENSMEUG00000003272
I
0.000
ENSMGAG00000000653
Meleagris gallopavo
ENSMGAG00000000653
I
0.000
SF3B4
Microcebus murinus
ENSMICG00000000296
I
0.000
ENSMLUG00000010789
Myotis lucifugus
ENSMLUG00000010789
I
0.000
AMAG_03157
Allomyces macrogynus
AMAG_03157
I
0.000